View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3057_low_20 (Length: 246)
Name: NF3057_low_20
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3057_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 32183535 - 32183309
Alignment:
| Q |
1 |
aataacaacatatctgtaactatgaaaatactcaagacattatttgcatggagcagaatttgggcaagcacacaaattcacagtgatgcaatatataata |
100 |
Q |
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| T |
32183535 |
aataacaacatatctgtaactatgaaaatactcaagaaattatttgcatggagcagaatttgggcaagcacacaaattcacagtgatgcaatatataata |
32183436 |
T |
|
| Q |
101 |
tatctactgaaattaagggaagatgtgtacctcatggaaaactagtggtatagaatttgaatcagcttgcaatttacttccacttagttcctgcaaagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183435 |
tatctactgaaattaagggaagatgtgtacctcatggaaaactagtggtatagaatttgaatcagcttgcaatttacttccacttagttcctgcaaagga |
32183336 |
T |
|
| Q |
201 |
acaactttctttagccattgtagatta |
227 |
Q |
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||||||||||||||| ||||||||||| |
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| T |
32183335 |
acaactttctttagctattgtagatta |
32183309 |
T |
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