View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3057_low_21 (Length: 245)
Name: NF3057_low_21
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3057_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 38510670 - 38510546
Alignment:
| Q |
40 |
tggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaaaaaggcttctaacgtaatatcagataccaacaccct |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38510670 |
tggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaaaaaggcttctaacgtaatatcagataccaacaccct |
38510571 |
T |
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| Q |
140 |
ttttcagtattagttttgctttgat |
164 |
Q |
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||||||||||||||||||||||||| |
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| T |
38510570 |
ttttcagtattagttttgctttgat |
38510546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 38510499 - 38510434
Alignment:
| Q |
175 |
ggattcatagatatgtgaatagagattagttttgctctatatttggaactaaaacttcatctcagt |
240 |
Q |
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|||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| ||||| |
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| T |
38510499 |
ggattcatagatatgtgaatagggattaattttgctacatatttggaactaaaacttcatttcagt |
38510434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 22145098 - 22144974
Alignment:
| Q |
40 |
tggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaaaaaggcttctaacgtaatatcagataccaacaccct |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22145098 |
tggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttaggagaagcagagaaaaaaggcttctaacgtaatatcagataccaacacccg |
22144999 |
T |
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| Q |
140 |
ttttcagtattagttttgctttgat |
164 |
Q |
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|||||||||||||||||| |||||| |
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| T |
22144998 |
ttttcagtattagttttgttttgat |
22144974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 27561155 - 27561220
Alignment:
| Q |
175 |
ggattcatagatatgtgaatagagattagttttgctctatatttggaactaaaacttcatctcagt |
240 |
Q |
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|||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||| |
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| T |
27561155 |
ggattcatagatatgtgaatagggattaattttgctatatatttggaactaaaacttcatttcagt |
27561220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 37457596 - 37457661
Alignment:
| Q |
175 |
ggattcatagatatgtgaatagagattagttttgctctatatttggaactaaaacttcatctcagt |
240 |
Q |
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|
|||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||| |
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| T |
37457596 |
ggattcatagatatgtgaatagggattaattttgctatatatttggaactaaaacttcatttcagt |
37457661 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 22144927 - 22144871
Alignment:
| Q |
175 |
ggattcatagatatgtgaatagagattagttttgctctatatttggaactaaaacttc |
232 |
Q |
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|||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
22144927 |
ggattcatagatatgtgaatag-gattaattttgctatatatttggaactaaaacttc |
22144871 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 5742745 - 5742680
Alignment:
| Q |
175 |
ggattcatagatatgtgaatagagattagttttgctctatatttggaactaaaacttcatctcagt |
240 |
Q |
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|
|||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||| |
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| T |
5742745 |
ggattcatagatatgtgaatagggattaattttgctatatatttggaactaaaacttcatttcagt |
5742680 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 38681796 - 38681859
Alignment:
| Q |
40 |
tggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaa |
103 |
Q |
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||||| |||||||||||| |||| ||||||||| |||||||||| | ||||||| |||||||| |
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| T |
38681796 |
tggttgttgtgttgtgtttcgccattgaattttaattttgcaggtgtagggagaaccagagaaa |
38681859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 38683049 - 38683112
Alignment:
| Q |
40 |
tggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaa |
103 |
Q |
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||||| |||||||||||| |||| ||||||||| |||||||||| | ||||||| |||||||| |
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| T |
38683049 |
tggttgttgtgttgtgtttcgccattgaattttaattttgcaggtgtagggagaaccagagaaa |
38683112 |
T |
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