View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3057_low_28 (Length: 213)
Name: NF3057_low_28
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3057_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 8421057 - 8420892
Alignment:
| Q |
17 |
ttcttgctcaattgtgattggaaatggctttagatgtatttgaaatagcaaggctaaaattgaagaatgaaactcatgaactcaagtagaataaattgaa |
116 |
Q |
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| T |
8421057 |
ttcttgctcaattgtgattggcaatggctttagatgtatttgaaatagcaaggctaaaattgaagaatgaaactcatgaactcaagtagaataaattgaa |
8420958 |
T |
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| Q |
117 |
agcaaagtggtgattaattatattatggcactatacagatcttttagaggaggtgagcgtgcatgt |
182 |
Q |
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| T |
8420957 |
aacaaagtggtgattaattatattatggcactatacagatcttttagaggaggtgagcgtgtatgt |
8420892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 49171058 - 49171223
Alignment:
| Q |
17 |
ttcttgctcaattgtgattggaaatggctttagatgtatttgaaatagcaaggctaaaattgaagaatgaaactcatgaactcaagtagaataaattgaa |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49171058 |
ttcttgctcaattgtgattggcaatggctttagatgtatttgaaatagcaaggctaaaattgaagaatgaaactcatgaactcaagtagaataaattgaa |
49171157 |
T |
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| Q |
117 |
agcaaagtggtgattaattatattatggcactatacagatcttttagaggaggtgagcgtgcatgt |
182 |
Q |
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| T |
49171158 |
aacaaagtggtgattaattatattatggcactataaagatcttttagaggaggtgagcgtgtatgt |
49171223 |
T |
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