View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3057_low_3 (Length: 582)
Name: NF3057_low_3
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3057_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 9233885 - 9234302
Alignment:
| Q |
1 |
accgaacagccaacagaaacaacagaagaaactccagctgctgtagaaacacaagatccagttgaagttgagaccaaggaagtggtaacagaagaagcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9233885 |
accgaacagccaacagaaacaacagaagaaactccagctgccgtagaaacacaagatccagttgaagttgagaccaaggaagtggtaacagaagaagcca |
9233984 |
T |
|
| Q |
101 |
aggaagagaatacagaagcacctaaagaaacagaggaatcagttgaagaagtgaaggaagaggctgcagcagtagtggaggagcctgtagcaaccattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9233985 |
aggaagagaatacagaagcacctaaagaaacagaggaatcagttgaagaagtgaaggaagaggctgcagcagtagtggaggagcctgtagcaaccattga |
9234084 |
T |
|
| Q |
201 |
aaatgagtcagaagcaccagcagcagtaactgctgaggaagagaatgttaaaccagttgagtcagtggaagctccagcagcagaagaagttccagttgag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9234085 |
aaatgagtcagaagcaccagcagcagtaactgctgaggaagagaatgttaaaccagttgagtcagtggaagctccagcagcagaagaagttccagttgag |
9234184 |
T |
|
| Q |
301 |
aaatctgaagcttaaaacaatggagggtgtgtgaatggaattgatgaaaaagagagattaaattaatggttctagttgttgggatcgggtctaccatttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9234185 |
aaatctgaagcttaaaacaatggagggtgtgtgaatggaattgatgaaaaagagagattaaattaatggttctagttgttgggatcgggtctaccatttt |
9234284 |
T |
|
| Q |
401 |
gcatgtcgaagttgaaaa |
418 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
9234285 |
gcatgtcgaggttgaaaa |
9234302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 479 - 568
Target Start/End: Original strand, 9234363 - 9234452
Alignment:
| Q |
479 |
agtaagtctttggaaatggttattcatatggagggtatagctatctacatcagttatgtatggaactttgctccatgtcagcatatatat |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9234363 |
agtaagtctttggaaatggttattcatatggagggtatagctatctacatcagttatgtatggaactttactccatgtcagcatatatat |
9234452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University