View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3057_low_4 (Length: 526)
Name: NF3057_low_4
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3057_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 151 - 510
Target Start/End: Original strand, 10820039 - 10820402
Alignment:
| Q |
151 |
ggttctacccggctcgatagattaacctttatagttgcatacaaaagatacctgattcacaccaaaaaaggtcacactaagnnnnnnnattttaggtgtc |
250 |
Q |
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| T |
10820039 |
ggttctacccggttcgatagattaacctttgtagttgcatacaaaagatacctgattcacaccaaaaaaggtcacactaagtttttttattttaggtgtc |
10820138 |
T |
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| Q |
251 |
taaacatattgaacacgtactgcataagtgcatagtatgatag----tagcaagagcttcttgtttgcttgatccactttactgcataacattgattatt |
346 |
Q |
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| T |
10820139 |
taaacatattgaacacgtactgcataagtgcatagtatgattgatggtagcaagagtttcttgtttgcttgatccactttactgcataacattgattatt |
10820238 |
T |
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| Q |
347 |
tggattccaaaattcctttgcctaccaaacttgaccaaagatttagttttcttgtatgttttgattcgaatctttggaagtgaattagtggaaataagca |
446 |
Q |
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| T |
10820239 |
tggattccaaaattcctttgcctaccaaacttgaccaaagatttagttttcttgtatgttatgattcgaatctttggaagtgaattagtggaaataagca |
10820338 |
T |
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| Q |
447 |
ccagctttcgaacaaaagagtgctgtcatgagatcagcttttaatcatgagacctgacatcatt |
510 |
Q |
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| T |
10820339 |
ccagctttcgaacaaaagagtgctgtcatgagatcagcttttaatcatgagacctgacatcatt |
10820402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 10819912 - 10819965
Alignment:
| Q |
13 |
aaaattcacatggcaatgagaggaatcatgaggtcatagtggtgaggctatatg |
66 |
Q |
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| T |
10819912 |
aaaattcacatggcaatgagaggaatcatgaggtcatagtggtgaggctatatg |
10819965 |
T |
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