View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3057_low_8 (Length: 458)

Name: NF3057_low_8
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3057_low_8
NF3057_low_8
[»] chr2 (4 HSPs)
chr2 (97-337)||(3083050-3083289)
chr2 (97-337)||(38403845-38404072)
chr2 (10-91)||(38404139-38404220)
chr2 (410-440)||(38403634-38403664)
[»] chr1 (7 HSPs)
chr1 (97-325)||(40909811-40910038)
chr1 (10-91)||(33814113-33814194)
chr1 (10-91)||(33873583-33873664)
chr1 (274-341)||(33814025-33814092)
chr1 (274-341)||(33873495-33873562)
chr1 (410-440)||(33813821-33813851)
chr1 (410-439)||(33873292-33873321)
[»] scaffold0036 (3 HSPs)
scaffold0036 (97-337)||(99435-99662)
scaffold0036 (10-91)||(99729-99810)
scaffold0036 (410-440)||(99224-99254)
[»] chr8 (2 HSPs)
chr8 (410-440)||(36236266-36236296)
chr8 (97-145)||(24469255-24469303)
[»] chr3 (1 HSPs)
chr3 (410-440)||(31232180-31232210)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 97 - 337
Target Start/End: Complemental strand, 3083289 - 3083050
Alignment:
Q  97 gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca 196  Q
    ||||||||||||| |||| ||| |||||||| |||||||||||  ||||| ||||||||| |||||||||| |||||||||| |||||||||||| ||||    
T  3083289 gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca 3083191  T
Q  197 taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccag 296  Q
    |||||||||| | |||||||||| | |||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||| ||||||     
T  3083190 taagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaatagcagtttcctcattctccacccctaaatgaataaagcagaacaccaa 3083091  T
Q  297 aaattggacatccttgtaagtaacaaacctgctgccttaca 337  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  3083090 aaattggacatccttgtaagtaacaaaccagctgccttaca 3083050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 97 - 337
Target Start/End: Complemental strand, 38404072 - 38403845
Alignment:
Q  97 gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca 196  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||  ||    |     
T  38404072 gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaact 38403973  T
Q  197 taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccag 296  Q
    ||||||||||||||| ||||||| | |||||          ||||||||||| ||||||||||||||||||| |||||||||||||||||   ||||||     
T  38403972 taagatgtagttattacaattaaagtttgtg----------ttaactccaatggcagtctcctcattctcagcccctaaatgaataaagc---acaccaa 38403886  T
Q  297 aaattggacatccttgtaagtaacaaacctgctgccttaca 337  Q
    |||||||||||| |||||||||| |||||||||||||||||    
T  38403885 aaattggacatcattgtaagtaataaacctgctgccttaca 38403845  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 38404220 - 38404139
Alignment:
Q  10 aagaatatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt 91  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||    
T  38404220 aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt 38404139  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 440
Target Start/End: Complemental strand, 38403664 - 38403634
Alignment:
Q  410 tttgcaatcgctacaaaaccaacatgaacct 440  Q
    |||||||||||||||||||||||||||||||    
T  38403664 tttgcaatcgctacaaaaccaacatgaacct 38403634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 9e-74; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 97 - 325
Target Start/End: Complemental strand, 40910038 - 40909811
Alignment:
Q  97 gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca 196  Q
    ||||||||||||| |||| ||| |||||||| |||||||||||  ||||| ||||||||| |||||||||| |||||||||| |||||||||||| ||||    
T  40910038 gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca 40909940  T
Q  197 taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccag 296  Q
    |||||||||| | |||||||||| | |||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||| ||||||     
T  40909939 taagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaatagcagtttccttattctccgcccctaaatgaataaagcagaacaccaa 40909840  T
Q  297 aaattggacatccttgtaagtaacaaacc 325  Q
    |||||||||||||||||||||||||||||    
T  40909839 aaattggacatccttgtaagtaacaaacc 40909811  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 33814194 - 33814113
Alignment:
Q  10 aagaatatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt 91  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  33814194 aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt 33814113  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 33873664 - 33873583
Alignment:
Q  10 aagaatatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt 91  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  33873664 aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt 33873583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 33814092 - 33814025
Alignment:
Q  274 aaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgccttacatacc 341  Q
    ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  33814092 aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacatacc 33814025  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 33873562 - 33873495
Alignment:
Q  274 aaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgccttacatacc 341  Q
    ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  33873562 aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacatacc 33873495  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 440
Target Start/End: Complemental strand, 33813851 - 33813821
Alignment:
Q  410 tttgcaatcgctacaaaaccaacatgaacct 440  Q
    |||||||||||||||||||||||||||||||    
T  33813851 tttgcaatcgctacaaaaccaacatgaacct 33813821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 439
Target Start/End: Complemental strand, 33873321 - 33873292
Alignment:
Q  410 tttgcaatcgctacaaaaccaacatgaacc 439  Q
    ||||||||||||||||||||||||||||||    
T  33873321 tttgcaatcgctacaaaaccaacatgaacc 33873292  T

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Target: scaffold0036 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 97 - 337
Target Start/End: Complemental strand, 99662 - 99435
Alignment:
Q  97 gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca 196  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||  ||    |     
T  99662 gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaact 99563  T
Q  197 taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccag 296  Q
    ||||||||||||||| ||||||| | |||||          ||||||||||| ||||||||||||||||||| |||||||||||||||||   ||||||     
T  99562 taagatgtagttattacaattaaagtttgtg----------ttaactccaatggcagtctcctcattctcagcccctaaatgaataaagc---acaccaa 99476  T
Q  297 aaattggacatccttgtaagtaacaaacctgctgccttaca 337  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  99475 aaattggacatccttgtaagtaataaacctgctgccttaca 99435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 99810 - 99729
Alignment:
Q  10 aagaatatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt 91  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||    
T  99810 aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt 99729  T

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Target: scaffold0036; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 440
Target Start/End: Complemental strand, 99254 - 99224
Alignment:
Q  410 tttgcaatcgctacaaaaccaacatgaacct 440  Q
    |||||||||||||||||||||||||||||||    
T  99254 tttgcaatcgctacaaaaccaacatgaacct 99224  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 440
Target Start/End: Original strand, 36236266 - 36236296
Alignment:
Q  410 tttgcaatcgctacaaaaccaacatgaacct 440  Q
    |||||||||||||||||||||||||||||||    
T  36236266 tttgcaatcgctacaaaaccaacatgaacct 36236296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 24469255 - 24469303
Alignment:
Q  97 gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaat 145  Q
    ||||||||||||| |||| ||| ||||  ||||||||||||||||||||    
T  24469255 gtagccattgtttgctcagagagaatgtggtcaaatagctacttaaaat 24469303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 440
Target Start/End: Complemental strand, 31232210 - 31232180
Alignment:
Q  410 tttgcaatcgctacaaaaccaacatgaacct 440  Q
    |||||||||||||||||||||||||||||||    
T  31232210 tttgcaatcgctacaaaaccaacatgaacct 31232180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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