View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3058_high_7 (Length: 294)
Name: NF3058_high_7
Description: NF3058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3058_high_7 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 24 - 294
Target Start/End: Original strand, 32305009 - 32305279
Alignment:
| Q |
24 |
ctcctggaaagtgaaaaccaaaatcttgtctaaggctctatttggtcttatattttacttatctttaaaagaagttaggtcaaatagcaatttttaaaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32305009 |
ctcctggaaagtgaaaaccaaaatcttgtctaaggctctatttggtcttatattttacttatctttaaaagaagttaggtcaaatagcattttttaaaag |
32305108 |
T |
|
| Q |
124 |
atcttaattacnnnnnnngcttatcttttatatattgggatcaagtccataagtacataattaaagcatatattagaaaatgaattaccccttaagaaga |
223 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32305109 |
atcttaattacaaaaaaagcttatcttttatatattgggatcaagtccataagtccataattaaagcatatattagaagatgaattaccccttaagaaga |
32305208 |
T |
|
| Q |
224 |
ttaatctcatgatcactaaatacaacaaggataccctagtgagtccattcctatataaaaagagtatcaat |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32305209 |
ttaatctcatgatcactaaatacaacaaggataccctagtgagtccattcctatataaaaagagtagcaat |
32305279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 32815579 - 32815513
Alignment:
| Q |
208 |
ttaccccttaagaagattaatctcatgatcactaaatacaacaaggataccctagtgagtccattcctat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| |
|
|
| T |
32815579 |
ttaccccttaagaagattaatctcatgattactagat---acaaggataccctagtgagtccattcctat |
32815513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 11423573 - 11423511
Alignment:
| Q |
27 |
ctggaaagtgaaaaccaaaatcttgtctaaggctctatttggtcttatattttacttatcttt |
89 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |
|
|
| T |
11423573 |
ctggaaagtggaaaccaaaatcttttctaacgctctatttgggcttattttttacttctcttt |
11423511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 32800182 - 32800112
Alignment:
| Q |
205 |
gaattaccccttaaga--agattaatctcatgatcactaaatacaacaaggataccctagtgagtccattccta |
276 |
Q |
| |
|
|||||| ||||||||| |||||||||| ||||| |||| |||||| |||||||||| |||||||||||||| |
|
|
| T |
32800182 |
gaattatcccttaagataagattaatctgatgatgactacatacaa---ggataccctaatgagtccattccta |
32800112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 50225307 - 50225351
Alignment:
| Q |
89 |
taaaagaagttaggtcaaatagcaatttttaaaagatcttaatta |
133 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
50225307 |
taaaagaagttaggtcgaatagtattttttaaaagatcttaatta |
50225351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University