View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3058_high_8 (Length: 276)
Name: NF3058_high_8
Description: NF3058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3058_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 15866837 - 15867100
Alignment:
| Q |
1 |
cataacctatagtttgaaataaatcatattataagaataaaaattagaaatttaatttaccaaattgcaagaattattaaagcaataaccttactttcaa |
100 |
Q |
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| T |
15866837 |
cataccctatagtttgaagtaaatcatattataagaataaaaattagaaatttaatttgcaaaattgcaagaattattaaagcaataaccttactttcaa |
15866936 |
T |
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| Q |
101 |
tttttctaggtggaatgccggattggcgatcttcctatgtttagcccatttcttaccctcataatgtactataccaacgctcaaatacttggcgatggat |
200 |
Q |
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| T |
15866937 |
tttttctaggtggaatgccggattggcgatcttcctatgtttagcccatttcttaccctcataatgtattataccaacgctcaaatacttggcgatggat |
15867036 |
T |
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| Q |
201 |
tttaatattggtttggggaagtcttcgatcttgttaaagacttccttaatttgatcagggtctg |
264 |
Q |
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| T |
15867037 |
tttaatattggtttggggaagtcctcgatcttgttaaagacttccttaatttgatcagggtctg |
15867100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 15860450 - 15860716
Alignment:
| Q |
1 |
cataacctatagtttgaaataaatcatattataagaataaaaattagaaatttaatttaccaaattgcaagaatta-ttaaagcaataaccttactttca |
99 |
Q |
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| T |
15860450 |
cataacctatagtttgaagtaaatcatattataagaataaaaattagaaatttaatttacaaaattgcaagaattaattaaagcaataaccttactttca |
15860549 |
T |
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| Q |
100 |
atttttctaggtggaatgccggattggcgatcttcctatgtttagcccatttcttaccctcataatgtactataccaacgctcaaatacttggcgatgga |
199 |
Q |
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| T |
15860550 |
atttttctaggtggaatgctggattggcgatcttcctatgtttagcccatttcttaccctcatgatctagtataccaacgttcaaatacttggcgatgga |
15860649 |
T |
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| Q |
200 |
ttttaatattggtttggggaagtcttcgatcttgttaaagacttccttaatttgatcagggtctgtg |
266 |
Q |
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| T |
15860650 |
tcttagttttggtttggggaagtcatcaatcttgttaaagacatccttaatttgatcagggtctgtg |
15860716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 15853089 - 15853354
Alignment:
| Q |
1 |
cataacctatagtttgaaataaatcatattataagaataaaaattagaaatttaatttaccaaattgcaagaattattaaagcaataaccttactttcaa |
100 |
Q |
| |
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|||| |||||||| |||| |||||||||| ||||||| |||| ||||||||| ||||| | |||||| || ||||| ||| ||||||||||||||||| |
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| T |
15853089 |
cataccctatagtatgaagtaaatcatataataagaagaaaagttagaaattcaatttgcaaaattgaaataattagctaagtaataaccttactttcaa |
15853188 |
T |
|
| Q |
101 |
tttttctaggtggaatgccggattggcgatcttcctatgtttagcccatttcttaccctcataatgtactataccaacgctcaaatacttggcgatggat |
200 |
Q |
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| T |
15853189 |
tttttctatatggaatgccggattgactatctttcgatgtgtagcccatttctcaccctcatggtgtactataccaacactcaaatacaaggcaatgggt |
15853288 |
T |
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| Q |
201 |
tttaatattggtttggggaagtcttcgatcttgttaaagacttccttaatttgatcagggtctgtg |
266 |
Q |
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|||| || ||||||||||||| || ||||||||||||| |||||||||||||||||||||||| |
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| T |
15853289 |
cttaacttttgtttggggaagtcctcagtcttgttaaagacatccttaatttgatcagggtctgtg |
15853354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 15846280 - 15846526
Alignment:
| Q |
20 |
taaatcatattataagaataaaaattagaaatttaatttaccaaattgcaagaattat-taaagcaataaccttactttcaatttttctaggtggaatgc |
118 |
Q |
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|||||||||||||||||| |||| ||||||||| |||| || |||||| || ||||| || |||||||||||||||||||||||||||| ||||||||| |
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| T |
15846280 |
taaatcatattataagaagaaaatttagaaattcaatt-acaaaattgaaataattagctagagcaataaccttactttcaatttttctatgtggaatgc |
15846378 |
T |
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| Q |
119 |
cggattggcgatcttcctatgtttagcccatttcttaccctcataatgtactataccaacgctcaaatacttggcgatggattttaatattggtttgggg |
218 |
Q |
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||||||| | ||||| | ||||||||||||||||| |||||| | ||| |||||||||| | |||||||||| ||||| | || ||| ||||||| |
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| T |
15846379 |
cggattgactatctttcgatgtttagcccatttctcaccctcttggtgtgctataccaacaccgaaatacttggaaatggagatgaactttgatttgggg |
15846478 |
T |
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| Q |
219 |
aagtcttcgatcttgttaaagacttccttaatttgatcagggtctgtg |
266 |
Q |
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| T |
15846479 |
aagtcctccatcctgttaaagatttccttaatttgatcagggtctgtg |
15846526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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