View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3058_low_1 (Length: 949)

Name: NF3058_low_1
Description: NF3058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3058_low_1
NF3058_low_1
[»] chr6 (7 HSPs)
chr6 (41-599)||(33651167-33651724)
chr6 (179-302)||(31130432-31130557)
chr6 (773-860)||(5741517-5741604)
chr6 (41-100)||(31130572-31130631)
chr6 (774-860)||(5741177-5741263)
chr6 (300-401)||(14272673-14272774)
chr6 (566-599)||(27613021-27613054)
[»] chr8 (16 HSPs)
chr8 (46-303)||(4363515-4363773)
chr8 (775-941)||(9512399-9512565)
chr8 (300-497)||(12657148-12657345)
chr8 (775-860)||(20669554-20669639)
chr8 (774-860)||(14097571-14097657)
chr8 (764-829)||(2784946-2785011)
chr8 (774-849)||(9511682-9511757)
chr8 (778-871)||(36933384-36933477)
chr8 (342-394)||(29415047-29415099)
chr8 (811-882)||(1175611-1175682)
chr8 (775-818)||(20669856-20669899)
chr8 (300-338)||(31014612-31014650)
chr8 (568-622)||(42619886-42619940)
chr8 (699-736)||(7376503-7376540)
chr8 (795-852)||(43531983-43532040)
chr8 (775-860)||(45156435-45156520)
[»] chr4 (17 HSPs)
chr4 (757-934)||(43138820-43138997)
chr4 (781-860)||(42704345-42704424)
chr4 (774-884)||(11661047-11661157)
chr4 (775-877)||(26973912-26974014)
chr4 (808-884)||(16935502-16935578)
chr4 (773-849)||(21713290-21713366)
chr4 (773-819)||(20394207-20394253)
chr4 (775-849)||(43139647-43139720)
chr4 (775-816)||(39834810-39834851)
chr4 (775-847)||(31825856-31825928)
chr4 (699-737)||(12241054-12241092)
chr4 (810-884)||(32938824-32938898)
chr4 (773-819)||(40361783-40361829)
chr4 (775-860)||(4674937-4675022)
chr4 (795-884)||(11660778-11660867)
chr4 (773-866)||(18487117-18487210)
chr4 (775-816)||(26251385-26251425)
[»] chr7 (14 HSPs)
chr7 (775-938)||(47441554-47441717)
chr7 (775-884)||(23245942-23246051)
chr7 (300-499)||(5779824-5780025)
chr7 (774-847)||(47442242-47442315)
chr7 (820-885)||(20188842-20188907)
chr7 (566-630)||(48145628-48145692)
chr7 (773-852)||(42627399-42627477)
chr7 (836-871)||(43466689-43466724)
chr7 (568-622)||(40854560-40854614)
chr7 (774-860)||(46273527-46273613)
chr7 (568-622)||(47954007-47954061)
chr7 (699-736)||(9055264-9055301)
chr7 (775-884)||(23943730-23943839)
chr7 (700-737)||(42276087-42276124)
[»] chr2 (13 HSPs)
chr2 (795-904)||(20147298-20147407)
chr2 (775-860)||(42882455-42882540)
chr2 (442-522)||(27748421-27748501)
chr2 (775-879)||(36074149-36074253)
chr2 (802-884)||(14414087-14414169)
chr2 (775-860)||(42807371-42807456)
chr2 (824-880)||(187266-187322)
chr2 (574-622)||(18737785-18737833)
chr2 (773-852)||(9826692-9826771)
chr2 (568-622)||(33616579-33616633)
chr2 (311-340)||(7706931-7706960)
chr2 (775-824)||(11815454-11815503)
chr2 (699-736)||(39737723-39737760)
[»] chr1 (14 HSPs)
chr1 (300-447)||(10825385-10825532)
chr1 (775-847)||(3872137-3872209)
chr1 (300-394)||(25534205-25534299)
chr1 (773-883)||(28485811-28485921)
chr1 (808-900)||(6086667-6086759)
chr1 (300-387)||(15857064-15857151)
chr1 (773-860)||(28539434-28539520)
chr1 (775-884)||(46090135-46090244)
chr1 (773-884)||(48569365-48569476)
chr1 (774-846)||(46923664-46923736)
chr1 (774-852)||(37919613-37919690)
chr1 (699-736)||(3826841-3826878)
chr1 (775-860)||(11435311-11435396)
chr1 (352-401)||(13202378-13202427)
[»] chr5 (12 HSPs)
chr5 (775-884)||(10397839-10397949)
chr5 (300-401)||(8365205-8365306)
chr5 (773-859)||(21102290-21102376)
chr5 (775-852)||(6408545-6408622)
chr5 (808-883)||(40018077-40018152)
chr5 (795-884)||(9942693-9942782)
chr5 (776-849)||(33972395-33972468)
chr5 (775-845)||(43275515-43275585)
chr5 (352-433)||(12822398-12822479)
chr5 (775-819)||(25868011-25868055)
chr5 (300-394)||(18751011-18751105)
chr5 (775-860)||(34954924-34955009)
[»] chr3 (17 HSPs)
chr3 (773-885)||(53630306-53630418)
chr3 (774-883)||(25226739-25226848)
chr3 (774-860)||(6778690-6778776)
chr3 (778-882)||(8634322-8634426)
chr3 (568-622)||(48353108-48353162)
chr3 (316-433)||(6878776-6878893)
chr3 (300-401)||(25781212-25781313)
chr3 (300-411)||(25779916-25780027)
chr3 (809-889)||(20513482-20513562)
chr3 (775-859)||(23030637-23030721)
chr3 (775-819)||(25227394-25227438)
chr3 (776-819)||(51147359-51147402)
chr3 (774-884)||(7789947-7790057)
chr3 (774-860)||(36754186-36754272)
chr3 (773-847)||(39417921-39417995)
chr3 (568-622)||(52714845-52714899)
chr3 (300-365)||(32466472-32466537)
[»] scaffold0007 (1 HSPs)
scaffold0007 (775-860)||(256391-256476)
[»] scaffold0408 (1 HSPs)
scaffold0408 (774-860)||(7914-8000)
[»] scaffold0012 (1 HSPs)
scaffold0012 (782-884)||(36268-36370)
[»] scaffold0001 (1 HSPs)
scaffold0001 (820-884)||(185420-185484)
[»] scaffold1122 (1 HSPs)
scaffold1122 (300-433)||(1531-1664)
[»] scaffold0276 (1 HSPs)
scaffold0276 (783-860)||(3628-3705)
[»] scaffold0010 (1 HSPs)
scaffold0010 (827-884)||(28590-28647)


Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 41 - 599
Target Start/End: Complemental strand, 33651724 - 33651167
Alignment:
Q  41 ctcaatatgtttttggggtgacgtgttcaggtatataagtacacattggaggactgaggagtatttgtagctcaacatccatccatgtctcagtcagaat 140  Q
    |||| ||||||||||||||||||| | ||| |||| |||||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||||    
T  33651724 ctcactatgtttttggggtgacgtttccagatatagaagtacacattggaggactg-ggagtatttgtagctcgtcatccatccaagtctcagtcagaat 33651626  T
Q  141 cggatcacgttaagagttagagttttaggactttgatgtcagatgttaatgtaaaatttcattttttaagttgtaaacttttcaatgaagtttttaaaga 240  Q
    || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33651625 cgaatcacgtcaagagttagagttttaggactttgatgtcagatgttaatgtaaaatttcattttttaagttgtaaacttttcaatgaagtttttaaaga 33651526  T
Q  241 gaattaaagtttctatttagaaaatatttcattcaatttttaacttaaatttggatgttacataaaagaattgaaattcttaaattgtcatctaaaggaa 340  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||     
T  33651525 gaaataaagtttctatatagaaaatatttcattcaatttttaacttaaatttggatgttacataaaagaattgaaattcctaaattgtcatctaaaagat 33651426  T
Q  341 ttaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttctataaatggacaaatctatctcatctaccttaccgtgagga 440  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||    
T  33651425 ttaacttcgtttatgaatcttagaagttcataacatactctttcttactttagtcgttctataaatggacaattctatctcatctaccttaccttgggga 33651326  T
Q  441 gaagaatgaaattattatgcaacgttcgaaaaagtgtgtttgctatatttctatgttcaaagataagactttggtatgtcacacaccttggttcagtgaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33651325 gaagaatgaaattattatgcaacgttcgaaaaagtgtgtttgctatatttctatgttcaaaggtaagactttggtatgtcacacaccttggttcagtgaa 33651226  T
Q  541 agccttaagacttttgttgactcaaagtgttagttgaacatctatttgtttgacaatca 599  Q
    ||||||| |||||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  33651225 agccttatgacttttgttgatttaaagtgttatttgaacatccatttgtttgacaatca 33651167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 179 - 302
Target Start/End: Complemental strand, 31130557 - 31130432
Alignment:
Q  179 tcagatgttaatgtaaaatttcatttttt-aagttgtaaacttttcaatgaagtttttaaagagaattaaagtttctatttagaaaatatttcattc-aa 276  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31130557 tcagatattaatgtaaaatttcatttttttaagttgtaaacttttcaataaagtttttaaagagaattaaagtttctatttagaaaatatttcattcaaa 31130458  T
Q  277 tttttaacttaaatttggatgttaca 302  Q
    |||||||||||||||||| |||||||    
T  31130457 tttttaacttaaatttgggtgttaca 31130432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 773 - 860
Target Start/End: Complemental strand, 5741604 - 5741517
Alignment:
Q  773 aagaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    |||||||||||||||| |||| |||||||||||| |||||||||||| || | ||||| | | |||||||||||| |||| |||||||    
T  5741604 aagaattctgctcttcaccctgcacttttcgctcgcgccctgcagccatgaccaaaatacacctgcgttagttaactaacgcaagtgt 5741517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 31130631 - 31130572
Alignment:
Q  41 ctcaatatgtttttggggtgacgtgttcaggtatataagtacacattggaggactgagga 100  Q
    |||| ||||||||| ||||||||| | |||||||| ||||||||||| ||||||||||||    
T  31130631 ctcactatgtttttcgggtgacgtttccaggtatagaagtacacatttgaggactgagga 31130572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 774 - 860
Target Start/End: Original strand, 5741177 - 5741263
Alignment:
Q  774 agaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    ||||||||||||||| |||| ||||||| |||| || ||||||||| || | ||||| || ||||| ||||||  |||| |||||||    
T  5741177 agaattctgctcttcaccctgcactttttgctcgcgtcctgcagccatgaccaaaataccaatgcgctagttatctaacgcaagtgt 5741263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 401
Target Start/End: Original strand, 14272673 - 14272774
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttc 399  Q
    ||||| |||| |||| |||  |||||||||| |||||||   ||||||| ||||||||||||| | ||| |||| |||| || |||||| ||||| ||||    
T  14272673 acatagaagatttgagatttctaaattgtcaactaaaggctctaacttcgtttatgaatcttatatgtttattagataccctctcttacgttagtagttc 14272772  T
Q  400 ta 401  Q
    ||    
T  14272773 ta 14272774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 599
Target Start/End: Complemental strand, 27613054 - 27613021
Alignment:
Q  566 agtgttagttgaacatctatttgtttgacaatca 599  Q
    ||||||| ||||||||||||||||||||||||||    
T  27613054 agtgttatttgaacatctatttgtttgacaatca 27613021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 2e-70; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 46 - 303
Target Start/End: Complemental strand, 4363773 - 4363515
Alignment:
Q  46 tatgtttttggggtgacgtgttcaggtatataagtacacattggaggactgaggagtatttgtagctcaacatccatccatgtctcagtcagaatcggat 145  Q
    |||||||||||||||| || |||||||||| |||| ||||||||| || |||||||||||| ||||||  |||||||||||||||||||| |||||||||    
T  4363773 tatgtttttggggtgatgttttcaggtatagaagtgcacattggatgattgaggagtatttatagctcgtcatccatccatgtctcagtccgaatcggat 4363674  T
Q  146 cacgttaagagttagagttttaggactttgatgtcagatgttaatgtaaaatttca-ttttttaagttgtaaacttttcaatgaagtttttaaagagaat 244  Q
    |||||  ||||||||||||||||||| |||||||||  ||||| |||||||||||| |||||| ||||||||||||||| || ||||||||||||| | |    
T  4363673 cacgtcgagagttagagttttaggac-ttgatgtcatgtgttattgtaaaatttcattttttttagttgtaaacttttcgataaagtttttaaagacatt 4363575  T
Q  245 taaagtttctatttagaaaatatttcattc-aatttttaacttaaatttggatgttacat 303  Q
    ||||||| ||||| |||||||||||||||| |||| ||||| ||||||||| ||||||||    
T  4363574 taaagttcctattgagaaaatatttcattcaaattcttaacctaaatttgggtgttacat 4363515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 775 - 941
Target Start/End: Complemental strand, 9512565 - 9512399
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgtta 874  Q
    |||||||||||||| |||| ||||||| |||| ||| ||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  9512565 gaattctgctcttcaccctgcactttttgctcgcgctctgcaaccttgctgaaaatacccatgcgttagttaagtaacgcaagtgttaaactctgtgtta 9512466  T
Q  875 cttaactaacactgtatgcgttaactcacagaaatgttaaggtatgtgcatcttaactcacgcaagt 941  Q
     ||||||||| |||  || |||||||||   || ||||||||| |||||||||||| ||||||||||    
T  9512465 tttaactaacgctgcgtgagttaactcatgcaagtgttaaggtctgtgcatcttaagtcacgcaagt 9512399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 300 - 497
Target Start/End: Complemental strand, 12657345 - 12657148
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttc 399  Q
    ||||||||||||| |||||  ||||||||||| ||||||    |  ||| | ||||||| |||||||||||| ||||| ||| | |||| ||||| ||||    
T  12657345 acataaaagaattaaaatttctaaattgtcatttaaagggtccagattcgtctatgaattttagaagttcataacatattctctattaccttagtagttc 12657246  T
Q  400 tataaatggacaaatctatctcatctaccttaccgtgaggagaagaatgaaattattatgcaacgttcgaaaaagtgtgtttgctatatttctatgtt 497  Q
    || |||  ||||   | ||||| |||| ||||||   ||||||||||| |||||| ||||||| ||||  ||||| ||||||||| ||||||||||||    
T  12657245 tacaaacagacatcaccatctcttctagcttaccaaaaggagaagaataaaattaatatgcaatgttctgaaaagagtgtttgctctatttctatgtt 12657148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 775 - 860
Target Start/End: Original strand, 20669554 - 20669639
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||  |||| | ||||| |||||||||||||||| || | |||||||    
T  20669554 gaattttgctctttcccctgcacttttcgctcacgccctgcaagcttgtccaaaatacccatgcgttagttaactagcgcaagtgt 20669639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 774 - 860
Target Start/End: Complemental strand, 14097657 - 14097571
Alignment:
Q  774 agaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    |||||| ||||||||||||| |||||||||||| |||||| || ||||||| ||||| || ||| | ||||||| |||| |||||||    
T  14097657 agaattttgctcttccccctgcacttttcgctcgcgccctccaaccttgcccaaaatacctatgtgatagttaactaacgcaagtgt 14097571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 764 - 829
Target Start/End: Original strand, 2784946 - 2785011
Alignment:
Q  764 aaaagattcaagaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaa 829  Q
    |||| |||||||||||||||||||| |||| ||||||||||||  ||||||||||| || ||||||    
T  2784946 aaaaaattcaagaattctgctcttctccctgcacttttcgctcgtgccctgcagccatgacgaaaa 2785011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 774 - 849
Target Start/End: Original strand, 9511682 - 9511757
Alignment:
Q  774 agaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagt 849  Q
    |||||||||||| ||||||| ||||||||| || || ||||||||||||  |||||| || |||||| ||||||||    
T  9511682 agaattctgctcatccccctgcacttttcgttcgcgtcctgcagccttgttgaaaatgcctatgcgtgagttaagt 9511757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 778 - 871
Target Start/End: Complemental strand, 36933477 - 36933384
Alignment:
Q  778 ttctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcg 871  Q
    |||||||||||||| |  |||||||| || |||||||||||| | || ||||| ||  |||| ||||||| |||| ||||||||||| ||||||    
T  36933477 ttctgctcttccccatgtacttttcgttcgcgccctgcagccattcctaaaatacctttgcgctagttaactaacgcaagtgttaaaatctgcg 36933384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 29415047 - 29415099
Alignment:
Q  342 taacttcatttatgaatcttagaagttcattacatactctttcttactttagt 394  Q
    ||||||| | |||||||||||||||| ||| |||||||||||||||| |||||    
T  29415047 taacttcgtctatgaatcttagaagtacatcacatactctttcttaccttagt 29415099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 811 - 882
Target Start/End: Complemental strand, 1175682 - 1175611
Alignment:
Q  811 cctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaacta 882  Q
    ||||||| | |||| ||||| ||| |||| ||||||||||   ||||||||||||| |||||||||||||||    
T  1175682 cctgcagtcatgccaaaaatacccttgcgctagttaagtagtgcaagtgttaaactatgcgttacttaacta 1175611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 775 - 818
Target Start/End: Complemental strand, 20669899 - 20669856
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagc 818  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||    
T  20669899 gaattttgctcttccccctgcacttttcgctcgcgccctgcagc 20669856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 31014612 - 31014650
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaagg 338  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  31014612 acataaaagaattgaaatttctaaattgtcatctaaagg 31014650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 568 - 622
Target Start/End: Original strand, 42619886 - 42619940
Alignment:
Q  568 tgttagttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgt 622  Q
    ||||| ||||||||| ||||| ||||||| |||||||||| || |||||||||||    
T  42619886 tgttatttgaacatcaatttgattgacaaccatatttttacaaagaaaagtatgt 42619940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 736
Target Start/End: Complemental strand, 7376540 - 7376503
Alignment:
Q  699 gttgttagaaattagttgtacaaatatcatctctctta 736  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  7376540 gttgttagaaattggttgtacaaatatcatttctctta 7376503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 795 - 852
Target Start/End: Original strand, 43531983 - 43532040
Alignment:
Q  795 cacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaac 852  Q
    |||||||||||| ||||| |||||||| || ||||| ||| |||||||||||| ||||    
T  43531983 cacttttcgctctcgcccggcagcctttcccaaaatacccctgcgttagttaactaac 43532040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 775 - 860
Target Start/End: Complemental strand, 45156520 - 45156435
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    |||| ||||||||| |||| |||||||||  | |||||||||||| || | ||||  | | |||||||||||| ||||||||||||    
T  45156520 gaatcctgctcttcaccctgcacttttcgtccgcgccctgcagccatgaccaaaaaactcctgcgttagttaactaacacaagtgt 45156435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 1e-59; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 757 - 934
Target Start/End: Original strand, 43138820 - 43138997
Alignment:
Q  757 atatcctaaaagattcaagaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaa 856  Q
    |||||||||||||||||||||||||||||||| || |  ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| || |||    
T  43138820 atatcctaaaagattcaagaattctgctcttctccgtgtacttttcgctcacgccctgcagccttgacgaaaatgcccatgcgttagttaagtgacgcaa 43138919  T
Q  857 gtgttaaactctgcgttacttaactaacactgtatgcgttaactcacagaaatgttaaggtatgtgcatcttaactca 934  Q
    ||||||||||| | |||||||||||||| |||  || |||||||||||||||||||||||| ||||||||||||||||    
T  43138920 gtgttaaactccgtgttacttaactaacgctgcgtgtgttaactcacagaaatgttaaggtctgtgcatcttaactca 43138997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 781 - 860
Target Start/End: Original strand, 42704345 - 42704424
Alignment:
Q  781 tgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    |||||||  |||| |||||||||||| |||||||||| |||||| ||||| |||||||||||| ||| |||| |||||||    
T  42704345 tgctcttttccctgcacttttcgctcgcgccctgcaggcttgcccaaaatacccatgcgttagctaactaacgcaagtgt 42704424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 774 - 884
Target Start/End: Complemental strand, 11661157 - 11661047
Alignment:
Q  774 agaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgtt 873  Q
    ||||| ||||||||| |||  |||||||| ||   ||||||||||| | || ||||| ||| |||||||||||| |||| ||||||| ||| | ||||||    
T  11661157 agaatactgctcttcacccagcacttttcacttgtgccctgcagccctcccaaaaatgcccttgcgttagttaactaacgcaagtgtaaaattatgcgtt 11661058  T
Q  874 acttaactaac 884  Q
    |||||||||||    
T  11661057 acttaactaac 11661047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 775 - 877
Target Start/End: Complemental strand, 26974014 - 26973912
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgtta 874  Q
    |||||||||||||| |||| ||||||||||||||||||||||| | || |||||||  |  | | ||| |||||||||  |||| |||||||||| ||||    
T  26974014 gaattctgctcttctccctgcacttttcgctcacgccctgcagtcatgacgaaaatatctctacattaattaagtaacgtaagtattaaactctgtgtta 26973915  T
Q  875 ctt 877  Q
    |||    
T  26973914 ctt 26973912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 808 - 884
Target Start/End: Original strand, 16935502 - 16935578
Alignment:
Q  808 cgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaactaac 884  Q
    ||||||||||||||| | || || ||| |||| ||||||| |||| |||||||||||||||| | ||||||||||||    
T  16935502 cgccctgcagccttgtccaagatacccttgcgctagttaaataacgcaagtgttaaactctgtgctacttaactaac 16935578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 773 - 849
Target Start/End: Complemental strand, 21713366 - 21713290
Alignment:
Q  773 aagaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagt 849  Q
    |||||||||||||||| |||| ||| ||| |||| |||||||||||| |||| ||||| ||| |||| |||||||||    
T  21713366 aagaattctgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagt 21713290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 773 - 819
Target Start/End: Complemental strand, 20394253 - 20394207
Alignment:
Q  773 aagaattctgctcttcccccttcacttttcgctcacgccctgcagcc 819  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  20394253 aagaattttgctcttccccctgcacttttcgctcgcgccctgcagcc 20394207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 775 - 849
Target Start/End: Complemental strand, 43139720 - 43139647
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagt 849  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||| ||| ||||||  || ||||| ||||||||    
T  43139720 gaattatgctcttcccccg-cacttttcgctcacgccctgcagccgtgctgaaaatatccttgcgtgagttaagt 43139647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 775 - 816
Target Start/End: Complemental strand, 39834851 - 39834810
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgca 816  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  39834851 gaattctgctcttccccctgcacttttcgctcgcgccctgca 39834810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 775 - 847
Target Start/End: Complemental strand, 31825928 - 31825856
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaa 847  Q
    |||||||||||||| |||| ||| ||| |||| |||||||||||| |||| ||||| ||| |||| |||||||    
T  31825928 gaattctgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaa 31825856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 699 - 737
Target Start/End: Complemental strand, 12241092 - 12241054
Alignment:
Q  699 gttgttagaaattagttgtacaaatatcatctctcttaa 737  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  12241092 gttgttagaaaatagttgtacaaatatcatttctcttaa 12241054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 810 - 884
Target Start/End: Complemental strand, 32938898 - 32938824
Alignment:
Q  810 ccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaactaac 884  Q
    |||||||||| |||| ||||| ||| ||||   |||||||| | || ||||||||||||| ||||||||||||||    
T  32938898 ccctgcagccatgccaaaaatgcccttgcgcaggttaagtagcgcatgtgttaaactctgtgttacttaactaac 32938824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 819
Target Start/End: Complemental strand, 40361829 - 40361783
Alignment:
Q  773 aagaattctgctcttcccccttcacttttcgctcacgccctgcagcc 819  Q
    ||||||||| |||||| |||| |||||||||||| ||||||||||||    
T  40361829 aagaattcttctcttcaccctgcacttttcgctcgcgccctgcagcc 40361783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 775 - 860
Target Start/End: Original strand, 4674937 - 4675022
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    |||| ||||||||| |||| |||||||||||| |||||||||| | || | ||||| |||||| | ||||||| |||  |||||||    
T  4674937 gaatcctgctcttcaccctgcacttttcgctcgcgccctgcagtcatgaccaaaatacccatgtgctagttaactaatgcaagtgt 4675022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 795 - 884
Target Start/End: Original strand, 11660778 - 11660867
Alignment:
Q  795 cacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaactaac 884  Q
    |||||||| ||| ||| |||||||| | || |||||  || |||||||||||| |||| ||||||| ||| | || ||||||||||||||    
T  11660778 cacttttcactcgcgctctgcagccatcccaaaaatatccttgcgttagttaactaacgcaagtgtaaaattatgtgttacttaactaac 11660867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 773 - 866
Target Start/End: Complemental strand, 18487210 - 18487117
Alignment:
Q  773 aagaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaact 866  Q
    |||||||||||||||  |||| ||| ||| |||||| ||||| |||| | || || || ||| |||||||||||| |||| ||||||| |||||    
T  18487210 aagaattctgctctttaccctgcacattttgctcacaccctgtagcccttccaaatatacccttgcgttagttaactaacgcaagtgtaaaact 18487117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 775 - 816
Target Start/End: Original strand, 26251385 - 26251425
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgca 816  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  26251385 gaattctgctct-cccccttcacttttcgctcgcgccctgca 26251425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 5e-37; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 775 - 938
Target Start/End: Original strand, 47441554 - 47441717
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgtta 874  Q
    ||||| |||||||| |||| ||||||| |||| || |||| ||||||||| ||||| ||  ||||||||||||||||| |||||||||||||||||||||    
T  47441554 gaattatgctcttcaccctgcactttttgctcgcgtcctgtagccttgccaaaaatgcctctgcgttagttaagtaacgcaagtgttaaactctgcgtta 47441653  T
Q  875 cttaactaacactgtatgcgttaactcacagaaatgttaaggtatgtgcatcttaactcacgca 938  Q
    |||||||||  |||  || ||||||||||  || |||||||||||| |||||||||||||||||    
T  47441654 cttaactaaagctgcgtgagttaactcacgcaagtgttaaggtatgcgcatcttaactcacgca 47441717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 775 - 884
Target Start/End: Complemental strand, 23246051 - 23245942
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgtta 874  Q
    |||||||||||||||| || |||||||||||| | |||||||||| | || ||||| ||| |||  ||||||| ||||  ||||||||||||||||||||    
T  23246051 gaattctgctcttcccactgcacttttcgctcgcaccctgcagccattccaaaaatgcccttgcactagttaactaacgtaagtgttaaactctgcgtta 23245952  T
Q  875 cttaactaac 884  Q
    ||||||||||    
T  23245951 cttaactaac 23245942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 300 - 499
Target Start/End: Original strand, 5779824 - 5780025
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattaca--tactctttcttactttagtcgt 397  Q
    ||||||||||||| | |||| |||||||| ||||||| |    ||||| || |||||||||||||||||||| |||  || ||| |||||| ||||| ||    
T  5779824 acataaaagaatt-agattcctaaattgttatctaaaagctcaaacttgatctatgaatcttagaagttcatcacacatattctctcttaccttagtagt 5779922  T
Q  398 tctataaatggacaaatctatctcatctaccttaccgtgaggagaagaatgaaatt-attatgcaacgttcgaaaaagtgtgtttgctatatttctatgt 496  Q
    |||||||| ||  ||  ||||||  | |||||||||  | ||| |||||| ||||| | ||||||||||||| ||||| ||||||||| |||||||||||    
T  5779923 tctataaacgggaaaccctatcttgtttaccttacctagtggaaaagaataaaattcaatatgcaacgttcggaaaagagtgtttgctctatttctatgt 5780022  T
Q  497 tca 499  Q
    |||    
T  5780023 tca 5780025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 774 - 847
Target Start/End: Complemental strand, 47442315 - 47442242
Alignment:
Q  774 agaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaa 847  Q
    |||||||||||| ||||||| |||||||| ||| |||||||||||||||| |||||| | ||||||| ||||||    
T  47442315 agaattctgctcatccccctgcacttttcactcgcgccctgcagccttgctgaaaatgctcatgcgtaagttaa 47442242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 820 - 885
Target Start/End: Complemental strand, 20188907 - 20188842
Alignment:
Q  820 ttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaactaaca 885  Q
    ||||||||||| ||||||||||||||||| |||||||  ||||||| ||||| |||||||| ||||    
T  20188907 ttgccgaaaatacccatgcgttagttaagcaacacaaacgttaaacactgcgctacttaaccaaca 20188842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 566 - 630
Target Start/End: Complemental strand, 48145692 - 48145628
Alignment:
Q  566 agtgttagttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgtatcggcac 630  Q
    ||||||| ||||||||| ||||| ||||||| |||||||||| || ||||||||||||| |||||    
T  48145692 agtgttatttgaacatcaatttgcttgacaaccatatttttacaaagaaaagtatgtattggcac 48145628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 852
Target Start/End: Original strand, 42627399 - 42627477
Alignment:
Q  773 aagaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaac 852  Q
    ||||||| |||||| |||||| |||||||||||| | |||||||  ||||||||||||  || |||||||||||| ||||    
T  42627399 aagaattttgctct-ccccctacacttttcgctcgcaccctgcaatcttgccgaaaatgtccctgcgttagttaactaac 42627477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 836 - 871
Target Start/End: Original strand, 43466689 - 43466724
Alignment:
Q  836 tgcgttagttaagtaacacaagtgttaaactctgcg 871  Q
    ||||||||||||||||||||||||||||| ||||||    
T  43466689 tgcgttagttaagtaacacaagtgttaaaatctgcg 43466724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 568 - 622
Target Start/End: Original strand, 40854560 - 40854614
Alignment:
Q  568 tgttagttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgt 622  Q
    ||||| ||||||||| ||||| ||||||| |||||||||| || |||||||||||    
T  40854560 tgttatttgaacatcaatttggttgacaaccatatttttacaaagaaaagtatgt 40854614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 774 - 860
Target Start/End: Complemental strand, 46273613 - 46273527
Alignment:
Q  774 agaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    |||||| |||||||  |||| |||||||||||| || | ||||| ||||   ||||| |||||||||||||||| |||| |||||||    
T  46273613 agaattttgctctttgccctgcacttttcgctcgcgtcttgcagtcttgttcaaaatacccatgcgttagttaactaacgcaagtgt 46273527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 568 - 622
Target Start/End: Original strand, 47954007 - 47954061
Alignment:
Q  568 tgttagttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgt 622  Q
    ||||| ||||||||| ||||  ||||||| ||||||||||||| |||||||||||    
T  47954007 tgttatttgaacatcaatttagttgacaaccatatttttataaagaaaagtatgt 47954061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 736
Target Start/End: Complemental strand, 9055301 - 9055264
Alignment:
Q  699 gttgttagaaattagttgtacaaatatcatctctctta 736  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  9055301 gttgttagaaattggttgtacaaatatcatttctctta 9055264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 775 - 884
Target Start/End: Complemental strand, 23943839 - 23943730
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgtta 874  Q
    |||||||||||||| |||| ||| ||| |||| ||| |||||||| | |  || || ||| |||||||||||| |||| || |||| ||||| |||| ||    
T  23943839 gaattctgctcttcaccctgcacattttgctcgcgctctgcagccgttctaaatatacccttgcgttagttaactaacgcaggtgtaaaactatgcgcta 23943740  T
Q  875 cttaactaac 884  Q
     |||||||||    
T  23943739 gttaactaac 23943730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 700 - 737
Target Start/End: Complemental strand, 42276124 - 42276087
Alignment:
Q  700 ttgttagaaattagttgtacaaatatcatctctcttaa 737  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  42276124 ttgttagaaaatagttgtacaaatatcatttctcttaa 42276087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 3e-26; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 795 - 904
Target Start/End: Original strand, 20147298 - 20147407
Alignment:
Q  795 cacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaactaacactgtatgcg 894  Q
    ||||||| |||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||| |||  |  |    
T  20147298 cactttttgctcgcgcccagcagccttgcccaaaatgcccatgcgttagttaagtaacacaagtgttaaactctgcactacttaactaacgctgccttag 20147397  T
Q  895 ttaactcaca 904  Q
    ||||||||||    
T  20147398 ttaactcaca 20147407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 775 - 860
Target Start/End: Original strand, 42882455 - 42882540
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| || | ||||| ||| | || ||||||| |||| |||||||    
T  42882455 gaattctgctcttcaccctgcacttttcgctcacgccctgcagccatgactaaaatacccctacgctagttaactaacgcaagtgt 42882540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 522
Target Start/End: Complemental strand, 27748501 - 27748421
Alignment:
Q  442 aagaatgaaattattatgcaacgttcgaaaaagtgtgtttgctatatttctatgttcaaagataagactttggtatgtcac 522  Q
    |||||| | |||| ||||||||||||||||||| ||||||||| | ||||||||||||   ||||||| | ||||||||||    
T  27748501 aagaataagattaatatgcaacgttcgaaaaagagtgtttgctctctttctatgttcattcataagacctaggtatgtcac 27748421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 775 - 879
Target Start/End: Complemental strand, 36074253 - 36074149
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgtta 874  Q
    ||||||||||||||||||| ||| ||||| || |||||||||| | | || ||||| ||| | || ||||||| ||||||| |||||||| |||| || |    
T  36074253 gaattctgctcttccccctacacatttcgttcgcgccctgcagtcattccaaaaatacccctacgctagttaactaacacacgtgttaaagtctgtgtaa 36074154  T
Q  875 cttaa 879  Q
    |||||    
T  36074153 cttaa 36074149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 802 - 884
Target Start/End: Complemental strand, 14414169 - 14414087
Alignment:
Q  802 cgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaactaac 884  Q
    ||||| ||||||||||| ||||| ||||| | | | |||||||||||||||  ||||||||||| ||||| ||||||| ||||    
T  14414169 cgctcgcgccctgcagcgttgcccaaaatactcttacgttagttaagtaacgtaagtgttaaacactgcgctacttaagtaac 14414087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 775 - 860
Target Start/End: Original strand, 42807371 - 42807456
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    ||||||||||| |||||||  |||||||| || ||||||||| || |  ||||||| | |||||||||||||| |||| |||||||    
T  42807371 gaattctgctcctccccctgtacttttcgttcgcgccctgcaaccataacgaaaatactcatgcgttagttaactaacgcaagtgt 42807456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 824 - 880
Target Start/End: Complemental strand, 187322 - 187266
Alignment:
Q  824 cgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaac 880  Q
    ||||||| |||||||||||||||| |||| ||||||| ||||| ||||||| |||||    
T  187322 cgaaaatgcccatgcgttagttaactaacgcaagtgtaaaactatgcgttagttaac 187266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 574 - 622
Target Start/End: Original strand, 18737785 - 18737833
Alignment:
Q  574 ttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgt 622  Q
    ||||||||| ||||| ||||||| ||||||||||||| |||||||||||    
T  18737785 ttgaacatcaatttgattgacaaccatatttttataaagaaaagtatgt 18737833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 852
Target Start/End: Original strand, 9826692 - 9826771
Alignment:
Q  773 aagaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaac 852  Q
    ||||||||||||||||  ||| ||| ||||||||||||||||||||| | || || || | | |||||||||||| ||||    
T  9826692 aagaattctgctcttcatcctgcacatttcgctcacgccctgcagcccttccaaatatacacttgcgttagttaactaac 9826771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 568 - 622
Target Start/End: Complemental strand, 33616633 - 33616579
Alignment:
Q  568 tgttagttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgt 622  Q
    ||||| ||||||||| ||||| ||||||| |||||||||| || |||||||||||    
T  33616633 tgttatttgaacatcaatttggttgacaaccatatttttacaaagaaaagtatgt 33616579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 340
Target Start/End: Original strand, 7706931 - 7706960
Alignment:
Q  311 ttgaaattcttaaattgtcatctaaaggaa 340  Q
    ||||||||||||||||||||||||||||||    
T  7706931 ttgaaattcttaaattgtcatctaaaggaa 7706960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 775 - 824
Target Start/End: Original strand, 11815454 - 11815503
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgcc 824  Q
    |||||||||||||| ||| ||| ||||||||| ||||||||||| |||||    
T  11815454 gaattctgctcttcacccatcagttttcgctcgcgccctgcagcgttgcc 11815503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 736
Target Start/End: Original strand, 39737723 - 39737760
Alignment:
Q  699 gttgttagaaattagttgtacaaatatcatctctctta 736  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  39737723 gttgttagaaattggttgtacaaatatcatttctctta 39737760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 300 - 447
Target Start/End: Original strand, 10825385 - 10825532
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttc 399  Q
    ||||||||||||||  |||| ||||||||||||||| ||  | |||||| | |||||||||||||||||||| ||| ||||| |||||| ||||| ||||    
T  10825385 acataaaagaattgggattcctaaattgtcatctaagggcttcaacttcgtctatgaatcttagaagttcataacacactctctcttaccttagtagttc 10825484  T
Q  400 tataaatggacaaatctatctcatctaccttaccgtgaggagaagaat 447  Q
    || ||| ||||||  ||||| |||||||||||||  | ||||||||||    
T  10825485 tacaaacggacaaccctatcccatctaccttaccaaggggagaagaat 10825532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 775 - 847
Target Start/End: Original strand, 3872137 - 3872209
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaa 847  Q
    ||||||||||||||||||| |||||||||||| |||||||||| |||||| ||||| ||||||||| ||||||    
T  3872137 gaattctgctcttccccctgcacttttcgctcgcgccctgcagtcttgccaaaaatgcccatgcgtgagttaa 3872209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 300 - 394
Target Start/End: Complemental strand, 25534299 - 25534205
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagt 394  Q
    ||||||||||||||  |||| ||||||||||||||||||   ||||||| | |||||||||||||||||||| ||||||||| | |||| |||||    
T  25534299 acataaaagaattgggattcctaaattgtcatctaaaggctctaacttcgtctatgaatcttagaagttcataacatactctctattaccttagt 25534205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 773 - 883
Target Start/End: Original strand, 28485811 - 28485921
Alignment:
Q  773 aagaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgt 872  Q
    ||||||||||||||||||||| |||||||||||| || ||||||||| | || ||||| | | | |||||||||| |||  ||||||| ||| | |||||    
T  28485811 aagaattctgctcttccccctgcacttttcgctcgcgacctgcagccatcccaaaaatgctcttacgttagttaactaatgcaagtgtaaaattatgcgt 28485910  T
Q  873 tacttaactaa 883  Q
    |||||||||||    
T  28485911 tacttaactaa 28485921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 808 - 900
Target Start/End: Complemental strand, 6086759 - 6086667
Alignment:
Q  808 cgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaactaacactgtatgcgttaact 900  Q
    ||||||||||  ||| ||||||| ||||||||||||||||||||  ||| |||||||||||  |||||||||||||| ||| ||| |||||||    
T  6086759 cgccctgcagttttgtcgaaaatgcccatgcgttagttaagtaatgcaaatgttaaactctatgttacttaactaacgctgcatgagttaact 6086667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 387
Target Start/End: Original strand, 15857064 - 15857151
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttctta 387  Q
    ||||||||||||||| |||||||||||||||||||||||    |||||| | |||||||||||||||| ||| ||| || ||||||||    
T  15857064 acataaaagaattgagattcttaaattgtcatctaaaggctccaacttcgtctatgaatcttagaagtacatcacacaccctttctta 15857151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 773 - 860
Target Start/End: Original strand, 28539434 - 28539520
Alignment:
Q  773 aagaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    ||||||| ||||||||||| | |||||||||||| ||||||||||||||||| ||||| ||||||| ||||| || |||| |||||||    
T  28539434 aagaattttgctcttcccc-tgcacttttcgctcgcgccctgcagccttgcctaaaatacccatgcattagtaaactaacgcaagtgt 28539520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 775 - 884
Target Start/End: Original strand, 46090135 - 46090244
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgtta 874  Q
    ||||||||||||||| ||| |||||||||||| || ||||||||| | || |||||  || |  |||| |||| |||||||||||| ||| | || ||||    
T  46090135 gaattctgctcttcctcctgcacttttcgctcgcgtcctgcagccatcccaaaaatatccttatgttaattaactaacacaagtgtaaaattatgtgtta 46090234  T
Q  875 cttaactaac 884  Q
    ||||||||||    
T  46090235 cttaactaac 46090244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 773 - 884
Target Start/End: Complemental strand, 48569476 - 48569365
Alignment:
Q  773 aagaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgt 872  Q
    |||||||||||||||| |||| ||| ||| |||| |||||||| ||| |||| ||||| ||| |||| ||||||| |  | |||||||||| | |||||     
T  48569476 aagaattctgctcttcaccctgcacattttgctcgcgccctgctgccatgccaaaaatgcccttgcgctagttaacttgcgcaagtgttaatcactgcgg 48569377  T
Q  873 tacttaactaac 884  Q
     |||||||||||    
T  48569376 aacttaactaac 48569365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 774 - 846
Target Start/End: Original strand, 46923664 - 46923736
Alignment:
Q  774 agaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagtta 846  Q
    ||||||||||||||| |||| ||| ||| |||| |||||||||||| |||| ||||| ||| |||| ||||||    
T  46923664 agaattctgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagtta 46923736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 774 - 852
Target Start/End: Original strand, 37919613 - 37919690
Alignment:
Q  774 agaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaac 852  Q
    ||||||||||||| || |||  ||||||||||| | || |||| ||||||||||||| |||||||| ||||||| ||||    
T  37919613 agaattctgctct-cctcctctacttttcgctcgcaccatgcaaccttgccgaaaatgcccatgcgctagttaactaac 37919690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 736
Target Start/End: Original strand, 3826841 - 3826878
Alignment:
Q  699 gttgttagaaattagttgtacaaatatcatctctctta 736  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  3826841 gttgttaaaaattagttgtacaaatatcatttctctta 3826878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 775 - 860
Target Start/End: Complemental strand, 11435396 - 11435311
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    |||||||||||||| |||| |||||||| ||| ||||||||| || || | ||||| | ||| || ||||||| |||| |||||||    
T  11435396 gaattctgctcttcaccctgcacttttcactcgcgccctgcaaccatgaccaaaatactcatacgctagttaactaacgcaagtgt 11435311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 13202427 - 13202378
Alignment:
Q  352 tatgaatcttagaagttcattacatactctttcttactttagtcgttcta 401  Q
    |||||||||||||||||||| ||||||||| |||||| ||| | ||||||    
T  13202427 tatgaatcttagaagttcatcacatactctctcttaccttaatagttcta 13202378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 775 - 884
Target Start/End: Original strand, 10397839 - 10397949
Alignment:
Q  775 gaattctgctcttcccccttcacttttc-gctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgtt 873  Q
    ||||| ||||||||||||  |||||||  |||| ||||| ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| | |    
T  10397839 gaattatgctcttcccccaacacttttttgctcgcgcccagcagccttgcccaaaatgctcatgcgttagttaagtaacacaagtgttaaactctgtgct 10397938  T
Q  874 acttaactaac 884  Q
    |||||||||||    
T  10397939 acttaactaac 10397949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 300 - 401
Target Start/End: Complemental strand, 8365306 - 8365205
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttc 399  Q
    ||||||||||||||| |||||||||||||||||||||||    |||||||| |||||||||||||||||||| ||||||| | |||||| ||||| ||||    
T  8365306 acataaaagaattgagattcttaaattgtcatctaaaggctccaacttcatctatgaatcttagaagttcatcacatactttgtcttaccttagtagttc 8365207  T
Q  400 ta 401  Q
    ||    
T  8365206 ta 8365205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 773 - 859
Target Start/End: Complemental strand, 21102376 - 21102290
Alignment:
Q  773 aagaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtg 859  Q
    ||||||| ||||||||| ||| |||||||||||| ||||||| ||||||||| ||||| |||||||||||||||| |||| ||||||    
T  21102376 aagaattttgctcttccacctgcacttttcgctcgcgccctgtagccttgcccaaaatacccatgcgttagttaactaacgcaagtg 21102290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 775 - 852
Target Start/End: Original strand, 6408545 - 6408622
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaac 852  Q
    |||||| ||||||| |||| |||||||||||||||| |||||||| || ||||||| ||| |||||||||||| ||||    
T  6408545 gaattcagctcttcaccctccacttttcgctcacgctctgcagccatggcgaaaatacccctgcgttagttaactaac 6408622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 808 - 883
Target Start/End: Original strand, 40018077 - 40018152
Alignment:
Q  808 cgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaactaa 883  Q
    ||||||||||  ||| ||||||| |||||||||||||||| |||| ||||||| ||||| ||||||| ||||||||    
T  40018077 cgccctgcagtgttgtcgaaaatacccatgcgttagttaactaacgcaagtgtaaaactatgcgttagttaactaa 40018152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 795 - 884
Target Start/End: Complemental strand, 9942782 - 9942693
Alignment:
Q  795 cacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaactaac 884  Q
    |||||||| ||| |||||||||||| |||||||||| ||| || |||||||||||| | ||| ||||||| ||||   ||||||||||||    
T  9942782 cacttttcactcgcgccctgcagccatgccgaaaatacccctgagttagttaagtagcgcaaatgttaaattctgtactacttaactaac 9942693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 776 - 849
Target Start/End: Original strand, 33972395 - 33972468
Alignment:
Q  776 aattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagt 849  Q
    |||||| ||||| ||||| |||||||||||| || ||||||||||||| ||||||  |||||||| ||||||||    
T  33972395 aattctactctttcccctgcacttttcgctcgcgtcctgcagccttgctgaaaatggccatgcgtgagttaagt 33972468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 775 - 845
Target Start/End: Original strand, 43275515 - 43275585
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagtt 845  Q
    ||||||||||| ||||||| |||||||||||| |||||||||||| | || ||||| ||| | ||||||||    
T  43275515 gaattctgctcatccccctgcacttttcgctcgcgccctgcagccattccaaaaatgcccttacgttagtt 43275585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 433
Target Start/End: Complemental strand, 12822479 - 12822398
Alignment:
Q  352 tatgaatcttagaagttcattacatactctttcttactttagtcgttctataaatggacaaatctatctcatctaccttacc 433  Q
    |||||||||||||||||||| || ||||||||||||||| ||| | | |||||| ||  || |||| |||||| ||||||||    
T  12822479 tatgaatcttagaagttcatcacgtactctttcttacttcagtagctttataaacgggtaactctaactcatccaccttacc 12822398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 775 - 819
Target Start/End: Original strand, 25868011 - 25868055
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagcc 819  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||    
T  25868011 gaatcctgctcttccccctgcacttttcgctcgcgccctgcagcc 25868055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 300 - 394
Target Start/End: Original strand, 18751011 - 18751105
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagt 394  Q
    |||||||||||| |  |||  |||||| |||||||||||    |||||| | |||| ||||||||||||||| ||||||||| |||||| |||||    
T  18751011 acataaaagaatcgggatttctaaattttcatctaaaggctccaacttcgtctatgcatcttagaagttcatcacatactctctcttaccttagt 18751105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 775 - 860
Target Start/End: Complemental strand, 34955009 - 34954924
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    |||||||||||||| ||| |||| |||||||| | || ||||||| |||| ||||| ||| |||| ||||||| || | |||||||    
T  34955009 gaattctgctcttcacccatcacatttcgctcgcaccttgcagccatgcctaaaatgcccctgcgctagttaactaccgcaagtgt 34954924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 773 - 885
Target Start/End: Complemental strand, 53630418 - 53630306
Alignment:
Q  773 aagaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgt 872  Q
    ||||||| || |||||||| | |||||||||||| |||||||||| |||| | |||||||||||||||||||||| |||| ||||||| ||    |||||    
T  53630418 aagaattttgttcttccccttgcacttttcgctcgcgccctgcaggcttgtccaaaattcccatgcgttagttaactaacgcaagtgtaaattaatgcgt 53630319  T
Q  873 tacttaactaaca 885  Q
    || ||||||||||    
T  53630318 tagttaactaaca 53630306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 774 - 883
Target Start/End: Original strand, 25226739 - 25226848
Alignment:
Q  774 agaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgtt 873  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||||| | ||||||||   | | |||||||||| |||| ||||||| ||| | | ||||    
T  25226739 agaattatgctcttccccctgcacttgtcgctcacgccctgcagccatcccgaaaatgttcttacgttagttaactaacgcaagtgtaaaattatacgtt 25226838  T
Q  874 acttaactaa 883  Q
    ||||||||||    
T  25226839 acttaactaa 25226848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 774 - 860
Target Start/End: Complemental strand, 6778776 - 6778690
Alignment:
Q  774 agaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    |||||| ||||||||||||| |||||||||||| ||||||| ||| | | | ||||| ||||| |||||||||| ||||||||||||    
T  6778776 agaattttgctcttccccctgcacttttcgctcgcgccctgaagcatagtccaaaatacccatacgttagttaactaacacaagtgt 6778690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 778 - 882
Target Start/End: Complemental strand, 8634426 - 8634322
Alignment:
Q  778 ttctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttactt 877  Q
    |||||||||||||| | ||| ||||||||   |||||||||| ||||  |||| ||| |||| ||||||||||||  |||||||||||||||||| | ||    
T  8634426 ttctgctcttccccttgcacatttcgctcgtaccctgcagccatgccataaatgcccttgcgctagttaagtaacgtaagtgttaaactctgcgtgagtt 8634327  T
Q  878 aacta 882  Q
    |||||    
T  8634326 aacta 8634322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 568 - 622
Target Start/End: Complemental strand, 48353162 - 48353108
Alignment:
Q  568 tgttagttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgt 622  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||    
T  48353162 tgttatttgaacatcaatttggttgacaatcatatttttataaagaaaagtatgt 48353108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 316 - 433
Target Start/End: Complemental strand, 6878893 - 6878776
Alignment:
Q  316 attcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttctataaatggacaaatc 415  Q
    |||||||||||||||||||||||    ||||||  || |||||||||||||| ||  ||||||  | |||||| ||||| |||||| ||| |||||| ||    
T  6878893 attcttaaattgtcatctaaaggctccaacttctcttgtgaatcttagaagtacaccacataccatctcttaccttagtagttctacaaacggacaattc 6878794  T
Q  416 tatctcatctaccttacc 433  Q
    ||| || |||||||||||    
T  6878793 tatgtcgtctaccttacc 6878776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 300 - 401
Target Start/End: Complemental strand, 25781313 - 25781212
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttc 399  Q
    |||||||||||||| ||||| ||||||||||||||||||    |||||  | |||||||||||||||||| |  |||||||| ||||||  |||| ||||    
T  25781313 acataaaagaattggaattcctaaattgtcatctaaaggctccaactttgtctatgaatcttagaagttcctcgcatactctctcttaccatagtagttc 25781214  T
Q  400 ta 401  Q
    ||    
T  25781213 ta 25781212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 300 - 411
Target Start/End: Complemental strand, 25780027 - 25779916
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttc 399  Q
    ||||||||||||||  |||| ||||||||||||||||||    ||||||||||||||||| || |||||    ||||||||| ||||||  |||| ||||    
T  25780027 acataaaagaattgggattcctaaattgtcatctaaaggctccaacttcatttatgaatcgtacaagtttcgcacatactctctcttaccatagtagttc 25779928  T
Q  400 tataaatggaca 411  Q
    || ||| |||||    
T  25779927 tacaaacggaca 25779916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 809 - 889
Target Start/End: Original strand, 20513482 - 20513562
Alignment:
Q  809 gccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaactaacactgt 889  Q
    ||||||||| |||||| ||||| ||  |||||||||||| |||| ||||||| ||||| |||| || ||||||||| ||||    
T  20513482 gccctgcagtcttgcccaaaatacctttgcgttagttaactaacgcaagtgtaaaactatgcgatagttaactaacgctgt 20513562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 775 - 859
Target Start/End: Complemental strand, 23030721 - 23030637
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtg 859  Q
    |||||||||||||| |||  ||| |||||||| | |||||||||| |||| ||||| |||||||| || |||| || ||||||||    
T  23030721 gaattctgctcttcacccaacacatttcgctcgcaccctgcagccatgcccaaaatgcccatgcgctaattaactagcacaagtg 23030637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 775 - 819
Target Start/End: Complemental strand, 25227438 - 25227394
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagcc 819  Q
    ||||||||||||||||||| |||||||||||| || |||||||||    
T  25227438 gaattctgctcttccccctgcacttttcgctcgcgtcctgcagcc 25227394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 776 - 819
Target Start/End: Original strand, 51147359 - 51147402
Alignment:
Q  776 aattctgctcttcccccttcacttttcgctcacgccctgcagcc 819  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||    
T  51147359 aattctgctctttcccctgcacttttcgctcgcgccctgcagcc 51147402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 774 - 884
Target Start/End: Complemental strand, 7790057 - 7789947
Alignment:
Q  774 agaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgtt 873  Q
    |||||| | |||||| || | ||||||||| || || ||||||||| | || ||||| ||| | |||||||||| |||| || |||| ||| | ||||||    
T  7790057 agaattttactcttctccatgcacttttcgttcgcgtcctgcagccatcccaaaaatgcccttacgttagttaactaacgcaggtgtaaaattatgcgtt 7789958  T
Q  874 acttaactaac 884  Q
    |||||||||||    
T  7789957 acttaactaac 7789947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 774 - 860
Target Start/End: Complemental strand, 36754272 - 36754186
Alignment:
Q  774 agaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    |||||||||||||||  ||| ||||||||||||||||| |||| |   | | ||||| ||| |||||||||||| |||| |||||||    
T  36754272 agaattctgctcttcatcctgcacttttcgctcacgccttgcaactacgaccaaaatacccctgcgttagttaactaacgcaagtgt 36754186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 847
Target Start/End: Complemental strand, 39417995 - 39417921
Alignment:
Q  773 aagaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaa 847  Q
    |||||||||||||||| |||| ||| ||| |||| |||||| ||||| |||| ||||| ||| |||| |||||||    
T  39417995 aagaattctgctcttcaccctccacattttgctcgcgccctccagccatgccaaaaatacccttgcgctagttaa 39417921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 568 - 622
Target Start/End: Complemental strand, 52714899 - 52714845
Alignment:
Q  568 tgttagttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgt 622  Q
    ||||| ||||||||| ||||| ||||||| |||||||||| || |||||||||||    
T  52714899 tgttatttgaacatcaatttggttgacaaccatatttttacaaagaaaagtatgt 52714845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 32466537 - 32466472
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaa 365  Q
    ||||||||| ||||| |||| |||||| |||||||||||    |||||| ||||||||||||||||    
T  32466537 acataaaagtattgagattcctaaattatcatctaaaggctccaacttcgtttatgaatcttagaa 32466472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 775 - 860
Target Start/End: Original strand, 256391 - 256476
Alignment:
Q  775 gaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    |||||||||||||| |||| ||| ||| ||||| ||||||||| | |||| ||||| |||||||||||||||| |||| |||||||    
T  256391 gaattctgctcttcaccctgcacattttgctcaggccctgcaggcgtgcccaaaatacccatgcgttagttaactaacgcaagtgt 256476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 774 - 860
Target Start/End: Complemental strand, 8000 - 7914
Alignment:
Q  774 agaattctgctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    |||||| ||||||||||||| |||||||||||| |||||| || ||||||| ||||| || ||| | ||||||| |||| |||||||    
T  8000 agaattttgctcttccccctgcacttttcgctcgcgccctccaaccttgcccaaaatacctatgtgatagttaactaacgcaagtgt 7914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 782 - 884
Target Start/End: Complemental strand, 36370 - 36268
Alignment:
Q  782 gctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaact 881  Q
    ||||||| |||  |||||||| ||| || ||||||||| | || ||||| ||| |||||||||||| |||| ||||||| ||| | ||||||||||||||    
T  36370 gctcttcacccagcacttttcactcgcgtcctgcagccatcccaaaaatgcccttgcgttagttaactaacgcaagtgtaaaattatgcgttacttaact 36271  T
Q  882 aac 884  Q
    |||    
T  36270 aac 36268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 820 - 884
Target Start/End: Original strand, 185420 - 185484
Alignment:
Q  820 ttgccgaaaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaactaac 884  Q
    ||||||||||| ||| |||||||||||| |||| ||||||| ||||| ||||||| |||||||||    
T  185420 ttgccgaaaatgcccctgcgttagttaactaacgcaagtgtaaaactatgcgttagttaactaac 185484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1122 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1122
Description:

Target: scaffold1122; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 300 - 433
Target Start/End: Original strand, 1531 - 1664
Alignment:
Q  300 acataaaagaatt-gaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgtt 398  Q
    ||||||||||||| |||||||| || ||||||||||||||  | ||  |  | |||||||||||||||||||| || ||||||||||||||| ||| | |    
T  1531 acataaaagaattagaaattctgaa-ttgtcatctaaaggcttcaaggttgtatatgaatcttagaagttcatcacgtactctttcttacttcagtagct 1629  T
Q  399 ctataaatggacaaatctatctcatctaccttacc 433  Q
     |||||| ||  || |||| |||||| ||||||||    
T  1630 ttataaacgggtaactctaactcatccaccttacc 1664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 783 - 860
Target Start/End: Complemental strand, 3705 - 3628
Alignment:
Q  783 ctcttcccccttcacttttcgctcacgccctgcagccttgccgaaaattcccatgcgttagttaagtaacacaagtgt 860  Q
    |||||| || |||||||||||||| |||||||||||| || | ||||| | | ||||||||||||  ||| |||||||    
T  3705 ctcttcacctttcacttttcgctcgcgccctgcagccatgactaaaatactcctgcgttagttaaccaacgcaagtgt 3628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 827 - 884
Target Start/End: Original strand, 28590 - 28647
Alignment:
Q  827 aaattcccatgcgttagttaagtaacacaagtgttaaactctgcgttacttaactaac 884  Q
    |||| |||||||||||||||| |||| ||||||| ||| | ||||||| |||||||||    
T  28590 aaatgcccatgcgttagttaactaacgcaagtgtaaaattatgcgttagttaactaac 28647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University