View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3058_low_10 (Length: 277)
Name: NF3058_low_10
Description: NF3058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3058_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 39018165 - 39018290
Alignment:
| Q |
15 |
aaatagaactcaaaaaacatcacttgcatcttcattaatgtattatagtacaagacaactatatacaaaaggcaaaaacaattataccagcaaatccaca |
114 |
Q |
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| T |
39018165 |
aaatagaactcaaaaaacatcacttgcatcttcattaatgtattatagtacaagacaactatatacaaaaggcaaaaacaattataccagcaaatccaca |
39018264 |
T |
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| Q |
115 |
tcaattaatgaagtatatctaataga |
140 |
Q |
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| T |
39018265 |
tcaattaatgaagtatatctaataga |
39018290 |
T |
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Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 39018318 - 39018405
Alignment:
| Q |
168 |
cttattcataaatgcattacacatctgaatgcataatgatcccttcctcttacctttccatccctttctatttttcttgtattctcat |
255 |
Q |
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| T |
39018318 |
cttattcataaatgcattacacatctgaatgcataatgatcccttcctcttacctttccatccctttctatttttcttgtattctcat |
39018405 |
T |
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