View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3058_low_12 (Length: 271)
Name: NF3058_low_12
Description: NF3058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3058_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 11488808 - 11489040
Alignment:
| Q |
15 |
atcaaaatcagctcatttgatgaatagaagacaaaagtactggagcatgttattattgtcatgattcttcttgtaaaaatgtttatat---ttgttaaat |
111 |
Q |
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| T |
11488808 |
atcaaaatcagctcatttgatgaattgaagacaaaagt---ggagcatgttatttttatcatgattcttcttgtaaaaatgtttatataatttgttaaat |
11488904 |
T |
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| Q |
112 |
attcttattcctataaacagttgttgaatagagttttacatacagtatttcctttcttcaaaatccaaaagttaatcctggttgagagcttaagg-taag |
210 |
Q |
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| T |
11488905 |
attcttattcctatatacatttgttgaatagagttttacatacagtatctcctttcttcaaaatgctgaagttaatcctggttgagagcttaaggttaag |
11489004 |
T |
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| Q |
211 |
ttttcttctaatattggtgaaaattgtgtattttgc |
246 |
Q |
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| T |
11489005 |
ttttgttctaatattgatgaaaattgtatattttgc |
11489040 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 9842631 - 9842699
Alignment:
| Q |
96 |
tttatatttgttaaatattcttattcctataaacagttgttgaatagagttttacatacagtatttcctttct |
168 |
Q |
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| T |
9842631 |
tttatctttgttaaaaattcttgttcctataaacatttgttgaatag----ttacatacagtacgtcctttct |
9842699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 25793920 - 25793994
Alignment:
| Q |
18 |
aaaatcagctcatttgatgaatagaagacaaaagtactggagcatgttattattgtcatgattcttcttgtaaaaatgttt |
98 |
Q |
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| T |
25793920 |
aaaatcagctcacttgatgaactgaaaacaaaagta---gggcatg---ttattgtaatgattcttcttgtaaaaatgttt |
25793994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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