View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3058_low_2 (Length: 589)
Name: NF3058_low_2
Description: NF3058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3058_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 157 - 575
Target Start/End: Complemental strand, 28698309 - 28697891
Alignment:
| Q |
157 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccgaaggagacaactatttccaaagtcagaattggaaa |
256 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| | | ||||||||||||||||||||||||||||||| |
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| T |
28698309 |
gttggctcatagatagtggttgcacaaaccacatgacttatgatcgtgagctctttaaagatttggacaagacaactatttccaaagtcagaattggaaa |
28698210 |
T |
|
| Q |
257 |
tggcgcacttatcgaagtaaaaggcaaggtaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
356 |
Q |
| |
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|| || |||||| |||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28698209 |
tgacgtacttattgaagtaaaaggcaagggaacagttgcaattgaaagcctttcaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
28698110 |
T |
|
| Q |
357 |
caaaaccttttgagtgttactcaactgctagagaatgcttataaagtgttgtttgaggnnnnnnnntgtgtgattaaagatgcaagcaacatagaaatgg |
456 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
28698109 |
cataaccttttgagtgttactcaactgctagagaatggttataaggagttgtttgaggataaaaaatgtgtgattaaagatgcaaacaacatagaaatgg |
28698010 |
T |
|
| Q |
457 |
tcaatgttcaaatgaaaggcaagagctttgccttggatttgatgaatgaggaaaaacatgttgttgtacacaaggaaggaaggattcaagttggtgttgc |
556 |
Q |
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| T |
28698009 |
tcaatgttcaaatgaaaggcaagagcttttccttggatttgataaatgaggaacaacatgttgttgtacccaaggatggaaggattcaggttggtgttgc |
28697910 |
T |
|
| Q |
557 |
gttcctccaccatccatct |
575 |
Q |
| |
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||||||||||||||||||| |
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| T |
28697909 |
gttcctccaccatccatct |
28697891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 28698545 - 28698405
Alignment:
| Q |
11 |
cagagaagcaatacaagtctcttttcaccctgtccatactgcnnnnnnnn-taaccatccaccaaacagatattggtggagaccaaaagtaaaatgtcac |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||||||||||||| | |||||||||||| |
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| T |
28698545 |
cagagcagcaatacaagtctcttttcaccttgtccattctgcaaaaaaaaataaccatccaccaaacagatgttggtggagaccagacgtaaaatgtcac |
28698446 |
T |
|
| Q |
110 |
aagtgtggtcagttaggacatgtggaaagaatatgcaaggc |
150 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
28698445 |
aagtgtggtcagttaggacatgtggaaagaatatgcaaggc |
28698405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 157 - 575
Target Start/End: Original strand, 627280 - 627698
Alignment:
| Q |
157 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccgaaggagacaactatttccaaagtcagaattggaaa |
256 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||| | | |||||||||||||||| ||||||||||||||| |
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| T |
627280 |
gttggctcatagatagtggttgcacaaaccacatgacttatgatcgtgagctctataaagatttggacgagacaactatttccagagtcagaattggaaa |
627379 |
T |
|
| Q |
257 |
tggcgcacttatcgaagtaaaaggcaaggtaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
356 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
627380 |
tggcgtacttattgaagtaaaaggcaagggaacagttgcaattgaatgcctttcaggtttgaaactaatttctgatgtcttatatgtttctaaaattaat |
627479 |
T |
|
| Q |
357 |
caaaaccttttgagtgttactcaactgctagagaatgcttataaagtgttgtttgaggnnnnnnnntgtgtgattaaagatgcaagcaacatagaaatgg |
456 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||| ||| |||||||||| |
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| T |
627480 |
caaaaccttttgagtgttactcaactgctagagaatggttataaggtgttgtttgaggataaaaaatgtgtgattacagatgcaaacaatatagaaatgg |
627579 |
T |
|
| Q |
457 |
tcaatgttcaaatgaaaggcaagagctttgccttggatttgatgaatgaggaaaaacatgttgttgtacacaaggaaggaaggattcaagttggtgttgc |
556 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||| |
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| T |
627580 |
tcaatgttcaaatgaaatgcaagagcttttccttggatttgatgaatgaggaacaacatgttgctgtacataaggaaggaaggattcaggttggtgttgc |
627679 |
T |
|
| Q |
557 |
gttcctccaccatccatct |
575 |
Q |
| |
|
||| |||||||||||||| |
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|
| T |
627680 |
attcttccaccatccatct |
627698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 627042 - 627184
Alignment:
| Q |
11 |
cagagaagcaatacaagtctcttttcaccctgtccatactgcnnnnnnnn---taaccatccaccaaacagatattggtggagaccaaaagtaaaatgtc |
107 |
Q |
| |
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||||| ||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||| | |||||||||| |
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| T |
627042 |
cagagcagcaatataagtctcttttcaccctatccatactgcaaaaaaaaaaataaccatccaccaaacagatgttggtggagaccagacgtaaaatgtc |
627141 |
T |
|
| Q |
108 |
acaagtgtggtcagttaggacatgtggaaagaatatgcaaggc |
150 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
627142 |
acaagtgtggccagttaggacatgtggaaagaatatgcaaggc |
627184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 157 - 398
Target Start/End: Complemental strand, 33721097 - 33720856
Alignment:
| Q |
157 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccgaaggagacaactatttccaaagtcagaattggaaa |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
33721097 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccggacgagacaactatttccaaagtcagaattggaaa |
33720998 |
T |
|
| Q |
257 |
tggcgcacttatcgaagtaaaaggcaaggtaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
356 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33720997 |
tggcgcacttatcgaagtaaaaggcaagggaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
33720898 |
T |
|
| Q |
357 |
caaaaccttttgagtgttactcaactgctagagaatgcttat |
398 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
33720897 |
caaaaccttttgagtgttactcaaccgctagagaatggttat |
33720856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 395 - 575
Target Start/End: Complemental strand, 33716568 - 33716388
Alignment:
| Q |
395 |
ttataaagtgttgtttgaggnnnnnnnntgtgtgattaaagatgcaagcaacatagaaatggtcaatgttcaaatgaaaggcaagagctttgccttggat |
494 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33716568 |
ttataaagtgttgtttgaggataaaaaatgtgtgattaaagatgcaaacaacatacaaatggtcaatgttcaaatgaaaggcaagagctttgccttggat |
33716469 |
T |
|
| Q |
495 |
ttgatgaatgaggaaaaacatgttgttgtacacaaggaaggaaggattcaagttggtgttgcgttcctccaccatccatct |
575 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33716468 |
ttgatgaatgaggaacaacatgttgttgtacacaaggaaggaaggattcaagttggtgttgcgttcctccaccatccatct |
33716388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 33721332 - 33721193
Alignment:
| Q |
11 |
cagagaagcaatacaagtctcttttcaccctgtccatactgcnnnnnnnntaaccatccaccaaacagatattggtggagaccaaaagtaaaatgtcaca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
33721332 |
cagagaagcaatacaagtctcttttcaccctgtccatactgcaaaaaaaataaccatccacaaaacagatattggtggagaccaaacgtaaaatgtcaga |
33721233 |
T |
|
| Q |
111 |
agtgtggtcagttaggacatgtggaaagaatatgcaaggc |
150 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33721232 |
agtgttgtcagttaggacatgtggaaagaatatgcaaggc |
33721193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 31082293 - 31082343
Alignment:
| Q |
311 |
aggtttgaaactaatttctgatgtcttatatgttcctaaaattaatcaaaa |
361 |
Q |
| |
|
|||| ||||||| || |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
31082293 |
aggtctgaaacttatctctgatgttttatatgttcctgaaattaatcaaaa |
31082343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 9307516 - 9307566
Alignment:
| Q |
311 |
aggtttgaaactaatttctgatgtcttatatgttcctaaaattaatcaaaa |
361 |
Q |
| |
|
|||| ||||||| || |||||||| |||||||||||| ||||||||||||| |
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| T |
9307516 |
aggtctgaaacttatctctgatgttttatatgttcctgaaattaatcaaaa |
9307566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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