View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3058_low_3 (Length: 419)
Name: NF3058_low_3
Description: NF3058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3058_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 405
Target Start/End: Complemental strand, 28916729 - 28916348
Alignment:
| Q |
20 |
acagagttcaaggttaacctatttgaaatttttgtttaaaattaaatgaatccttagtttttataatctgannnnnnnnaataaatatattttttagggt |
119 |
Q |
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| T |
28916729 |
acagagttcaaggttaacctatttgaaatttttgtttaaaattaaatgaatccttagtttttataatctgattttttttaataaatatattttttagggt |
28916630 |
T |
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| Q |
120 |
gtgcttcgtaatggtgtcgtggttgttgtcaagaaaatggtcggatcttgaatgagtgctaacatacaattcaccgcagagataacgaccattggaaatc |
219 |
Q |
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| T |
28916629 |
gttcttcgtaatggtgtcgtggttgttgtcaagaaaatgatcggatctcgcatgagcgctaacatacaattcaccgcagagataacgaccattggaaatc |
28916530 |
T |
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| Q |
220 |
tccagcaccggaatcttgtaaaatcaataggctttgcggttaatgagaaaattttctcagtatgttgaagactaagtgtgtcataacacatacatggtat |
319 |
Q |
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| T |
28916529 |
tccagcaccggaatcttgtaaaatcaacaggctttgcggttaatgagaaaattttctcagtatgttgaagactaagtgggtcataacacatacatggtat |
28916430 |
T |
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| Q |
320 |
ttgttcaaaatcttcttccattagaatctggcttatatatatatttcaatgtttctgaaaaatcagcatcttcaaatgtagaatct |
405 |
Q |
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| T |
28916429 |
ttgttcaaaatcttctaacattagaatctggcttat----atatttcaatgtttctgaaagatcagcatcttcaaatgtagaatct |
28916348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 35022000 - 35022048
Alignment:
| Q |
40 |
atttgaaatttttgtttaaaattaaatgaatccttagtttttataatct |
88 |
Q |
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| T |
35022000 |
atttgaaatttttgtttaaaatttaatgaattcttattttttataatct |
35022048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 265 - 405
Target Start/End: Complemental strand, 41596890 - 41596754
Alignment:
| Q |
265 |
agaaaattttctcagtatgttgaagactaagtgtgtcataacacatacatggtatttgttcaaaatcttcttccattagaatctggcttatatatatatt |
364 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||| ||||| |
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| T |
41596890 |
agaaaattttctcagtatgttgaagactaagtgggtcataacacatacatggtttttgttcaaattcttcttccattaaaatctggcttat----atatt |
41596795 |
T |
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| Q |
365 |
tcaatgtttctgaaaaatcagcatcttcaaatgtagaatct |
405 |
Q |
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| T |
41596794 |
tcactgtttctgaaaaatcagcatcttcaaaggtagaatct |
41596754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 265 - 405
Target Start/End: Complemental strand, 27326153 - 27326021
Alignment:
| Q |
265 |
agaaaattttctcagtatgttgaagactaagtgtgtcataacacatacatggtatttgttcaaaatcttcttccattagaatctggcttatatatatatt |
364 |
Q |
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||||||||||||||||| |||||||||| | ||||||||||||||||||| ||||||||||||||| |||||| | ||| |||||||| ||||| |
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| T |
27326153 |
agaaaattttctcagta----gaagactaagcgggtcataacacatacatggtttttgttcaaaatctttttccatcaaaatatggcttat----atatt |
27326062 |
T |
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| Q |
365 |
tcaatgtttctgaaaaatcagcatcttcaaatgtagaatct |
405 |
Q |
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||| || ||||||||||| |||||||| ||| ||||||||| |
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| T |
27326061 |
tcactgcttctgaaaaattagcatctttaaaggtagaatct |
27326021 |
T |
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