View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3058_low_4 (Length: 354)
Name: NF3058_low_4
Description: NF3058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3058_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 49544963 - 49545294
Alignment:
| Q |
8 |
acatcatcaaatggaaggtaacataaacataggtagccttatttttaaatccgtcgtatgcctcaatatgtattggtccggccttgacatatgttgtatg |
107 |
Q |
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| T |
49544963 |
acatcatcaaatggaaggtaacataaacataggtagccttatttttaaatccgtcgtatgcctcaatatgtattggtccagccttgacatatgttgtatg |
49545062 |
T |
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| Q |
108 |
tttcgtaattttctttatgcaggagttgcaagacagagttgacagggtcatggattattcagatgtggagttgatgtcattatggagggaaatagttgac |
207 |
Q |
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| T |
49545063 |
tttcgtaattttctttatgcaggagttgcaagacagagttgacagggtcatggattattcagatttggagttgatgtcattatggagggaaatagttgac |
49545162 |
T |
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| Q |
208 |
ttccatggggagatggttttgttggagaactatagtgcacttaactacacaggcatgatctaaattctaatctaagatctgatatagtcatatattcatg |
307 |
Q |
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| T |
49545163 |
ttccatggggagatggttttgttggagaactatagtgcacttaactacacaggcatgatctaaattctaatctaagatctgatatagttatatattcatg |
49545262 |
T |
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| Q |
308 |
aataatgtaaatgttgacttgtatgtgttttt |
339 |
Q |
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| T |
49545263 |
aataatgtaactgttgacttgtgtgtgttttt |
49545294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 2469923 - 2469838
Alignment:
| Q |
175 |
gagttgatgtcattatggagggaaatagttgacttccatggggagatggttttgttggagaactatagtgcacttaactacacagg |
260 |
Q |
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| T |
2469923 |
gagttgatgacagtagggagggaaatagtggattttcatggagagatggttttgttagagaactatagtgcacttaactacacagg |
2469838 |
T |
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