View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3058_low_5 (Length: 332)

Name: NF3058_low_5
Description: NF3058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3058_low_5
NF3058_low_5
[»] chr1 (18 HSPs)
chr1 (18-175)||(13244450-13244607)
chr1 (18-181)||(13080788-13080951)
chr1 (180-324)||(13244107-13244251)
chr1 (18-182)||(12963797-12963961)
chr1 (18-175)||(13271692-13271849)
chr1 (18-183)||(19279089-19279254)
chr1 (18-178)||(13086213-13086373)
chr1 (24-176)||(13129940-13130092)
chr1 (44-176)||(13094531-13094663)
chr1 (44-176)||(13070104-13070236)
chr1 (44-176)||(13161653-13161785)
chr1 (44-176)||(13204591-13204723)
chr1 (180-249)||(12963575-12963644)
chr1 (187-254)||(19278827-19278894)
chr1 (22-97)||(30368115-30368190)
chr1 (44-176)||(13101132-13101264)
chr1 (44-176)||(13007332-13007464)
chr1 (245-324)||(19278730-19278809)


Alignment Details
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 13244607 - 13244450
Alignment:
Q  18 cattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13244607 cattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgatagcgcacttgtgctgaaatgccaga 13244508  T
Q  118 ggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaa 175  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13244507 ggaggatatagcctcaaggtttcacatatggctccatgaaggtaaacaagcttatcaa 13244450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 13080951 - 13080788
Alignment:
Q  18 cattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccaga 117  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||| | |    
T  13080951 cattgcatacaaagaatatattaactttgtatttggactaacatggtctccactaggaagtttatccgatttgatagcacacttgtgctgaaatgctaca 13080852  T
Q  118 ggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagctctt 181  Q
    | |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  13080851 gaaggatatagccttaaggcttcacatatggctccatgaaggtaaactagcttatcaagctctt 13080788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 180 - 324
Target Start/End: Complemental strand, 13244251 - 13244107
Alignment:
Q  180 tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtactcagttatacatttgtc 279  Q
    |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  13244251 tttccccctttcccaatctttccttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtaatcagttatacatttctc 13244152  T
Q  280 caagaagtggtgaagattttcttttgctgccttgcccttcatctc 324  Q
    |||||| ||||||||||||||| | ||||||||||||||| ||||    
T  13244151 caagaattggtgaagattttctctagctgccttgcccttcttctc 13244107  T

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Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 12963961 - 12963797
Alignment:
Q  18 cattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccaga 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||| || ||||||||||| | |||||  | |    
T  12963961 cattgcatacaaagaatatatcaactttgtatttggactaacatggtctccactaggtaatatatctgatttaattgcacacttgtgttcaaatggtata 12963862  T
Q  118 ggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagctcttt 182  Q
    |||||| | |||||||| | |||||| || ||||||||||| |||||||||||||||||| ||||    
T  12963861 ggaggataaagccttaaagcttcacaaatagctccatgaagataaacaagcttatcaagcccttt 12963797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 13271692 - 13271849
Alignment:
Q  18 cattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccaga 117  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |  ||||||||||| | |||||  | |    
T  13271692 cattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtata 13271791  T
Q  118 ggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaa 175  Q
    |||||| | || || |||||||||||||| ||| ||||||||||||  ||||||||||    
T  13271792 ggaggataaagtctcaaggtttcacatatagctgcatgaaggtaaatcagcttatcaa 13271849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 19279254 - 19279089
Alignment:
Q  18 cattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccaga 117  Q
    ||||||||||||||| ||||| |||||||||||| ||| |||||||| |||||||||||||||||| || || |  ||||||||||| | |||||  | |    
T  19279254 cattgcatacaaagagtatattaactttgtatttagactaacatggtctccactaggtagtatatcggaattaactgcacacttgtgttcaaatggtaca 19279155  T
Q  118 ggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagctctttc 183  Q
    || ||| | |||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  19279154 ggtggataaagccttaaggcttcacatatagctccatgaagataaactagcttatcaagctctttc 19279089  T

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Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 13086213 - 13086373
Alignment:
Q  18 cattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccaga 117  Q
    ||||||||||||||| ||||| ||||| ||||||||   |||||  | |||||||||||||||||||| |||||| |||||||||||||||||||  | |    
T  13086213 cattgcatacaaagagtatattaacttagtatttggtttaacataatctccactaggtagtatatcagctttgattgcacacttgtgctgaaatggtaca 13086312  T
Q  118 ggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagct 178  Q
    |||||| | ||||| || | ||||||||| |||||||||||||| || || |||| |||||    
T  13086313 ggaggataaagcctcaatgcttcacatatagctccatgaaggtacactagtttattaagct 13086373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 13129940 - 13130092
Alignment:
Q  24 atacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggagga 123  Q
    ||||||||| || |||||  |||||||||||| |||||||| ||||||||||||||||||||||||||| | |||  | |||| ||| |  | |||||||    
T  13129940 atacaaagagtaaatcaaagttgtatttggactaacatggtatccactaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggagga 13130039  T
Q  124 aatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaag 176  Q
     | |||||||||||||||||||| |||||||| ||||| || |||||||||||    
T  13130040 taaagccttaaggtttcacatatagctccatggaggtatactagcttatcaag 13130092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 13094531 - 13094663
Alignment:
Q  44 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 143  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||||| |||||  | |||| ||| |  | ||||||| | |||||||||||||||||    
T  13094531 ttgtatttggagtaacatggtatccactaggtagtatatcagatttgattgcacagatatgctcaaaaggtacaggaggataaagccttaaggtttcaca 13094630  T
Q  144 tatggctccatgaaggtaaacaagcttatcaag 176  Q
    ||| |||||||| ||||| || |||||||||||    
T  13094631 tatagctccatggaggtatactagcttatcaag 13094663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 176
Target Start/End: Complemental strand, 13070236 - 13070104
Alignment:
Q  44 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 143  Q
    |||||||||||| |||| | | |||||||||||||||||| |||||||| |||||  | |||| ||| |  | ||||||| | || || |||||||||||    
T  13070236 ttgtatttggactaacacgctctccactaggtagtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggtttcaca 13070137  T
Q  144 tatggctccatgaaggtaaacaagcttatcaag 176  Q
    ||| |||||||||||||| || || ||||||||    
T  13070136 tatagctccatgaaggtacactagattatcaag 13070104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 13161653 - 13161785
Alignment:
Q  44 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 143  Q
    |||||||||||| || | | | |||||||||||||||||| |||||||| |||||  | |||| ||| |  | ||| ||| | |||||||||||||||||    
T  13161653 ttgtatttggactaatacgttctccactaggtagtatatcggatttgattgcacagatatgctcaaaaggtataggtggataaagccttaaggtttcaca 13161752  T
Q  144 tatggctccatgaaggtaaacaagcttatcaag 176  Q
    ||| |||||||| ||||| || |||||||||||    
T  13161753 tatagctccatggaggtatactagcttatcaag 13161785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 13204591 - 13204723
Alignment:
Q  44 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 143  Q
    |||||||||||| |||| | | |||||||||||||||||| |||||||| |||||  | |||| ||| |  | ||||||| | || || |||| ||||||    
T  13204591 ttgtatttggactaacacgctctccactaggtagtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggcttcaca 13204690  T
Q  144 tatggctccatgaaggtaaacaagcttatcaag 176  Q
    ||| |||||||||||||| || |||||||||||    
T  13204691 tatagctccatgaaggtacactagcttatcaag 13204723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 12963644 - 12963575
Alignment:
Q  180 tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttc 249  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||||| || |||||||||| || |||||    
T  12963644 tttccccctttcccaatccttccttcattagatcttttagcaggcaagaatgagattcatccacgtcttc 12963575  T

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Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 19278894 - 19278827
Alignment:
Q  187 ctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttc 254  Q
    ||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||  | ||||||||||    
T  19278894 ctttcccaatctttccttcattagttcttttaccaggcaataatgagattcatccgcgtcttcatttc 19278827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 30368190 - 30368115
Alignment:
Q  22 gcatacaaagaatatatcaactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcac 97  Q
    ||||||||||| || || ||||| |||||||||| |||||  | ||||||||||||||||||||||||||| ||||    
T  30368190 gcatacaaagagtaaattaacttggtatttggactaacattctctccactaggtagtatatcagatttgattgcac 30368115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 13101132 - 13101264
Alignment:
Q  44 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 143  Q
    |||||||||||| || | | | ||||||||| |||||||| |||||||| | |||  | |||| ||| |  | ||||||| | ||||| |||||||||||    
T  13101132 ttgtatttggactaaaacgctctccactaggaagtatatcggatttgattgaacatatatgctcaaaaggtacaggaggataaagcctcaaggtttcaca 13101231  T
Q  144 tatggctccatgaaggtaaacaagcttatcaag 176  Q
    ||| |||||||| ||||| || |||||||||||    
T  13101232 tatagctccatggaggtacactagcttatcaag 13101264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 13007332 - 13007464
Alignment:
Q  44 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 143  Q
    |||||||||||| |||| | | |||||||||||||||||| || ||||| |||||  | |||| ||| |  | ||||||| | ||||| | || ||||||    
T  13007332 ttgtatttggactaacacgctctccactaggtagtatatcggaattgattgcacagatatgctcaaaaggtacaggaggataaagcctcatggcttcaca 13007431  T
Q  144 tatggctccatgaaggtaaacaagcttatcaag 176  Q
    ||  |||||||| ||||| || |||||||||||    
T  13007432 tagagctccatggaggtacactagcttatcaag 13007464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 19278809 - 19278730
Alignment:
Q  245 tcttcatttcctttgtactcagttatacatttgtccaagaagtggtgaagattttcttttgctgccttgcccttcatctc 324  Q
    |||||||  |||||||| | || ||||||||||| |||||| | ||||||||||||||| ||| || |||||||| ||||    
T  19278809 tcttcatcacctttgtaataagatatacatttgttcaagaattcgtgaagattttctttagctaccgtgcccttcttctc 19278730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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