View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3058_low_6 (Length: 323)
Name: NF3058_low_6
Description: NF3058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3058_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 50361565 - 50361872
Alignment:
| Q |
1 |
tgtcatatgggtaggtgatccggctgagtcacagagagtgattcaatttgaggtaagtaaattatttagatgttctgctcctaaagaacttgaagctctt |
100 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50361565 |
tgtcgtatgggtaggtgattcggctgagtcacagagagtgattcaatttgaggtaagtaaattacacagatgttctgctcctaaagaacttgaagctctt |
50361664 |
T |
|
| Q |
101 |
gaaaattcaatgtcacattgagaagtgtataaattaatgttatacttatgcttaataccaacaagctattgatttttcgaatgtgctttattttattgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50361665 |
gaaaattcaatgtcacattgagaagtgtataaattaatgttatacttatgcttaataccaacaagctattgatttttcgaatgtgctttattttattgat |
50361764 |
T |
|
| Q |
201 |
ttgttttaaggaataaatgt-aggcttattgccatttgattctaattacacgtgttgaattagtttatatatgctaaggttatcatcatgtagagagtat |
299 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50361765 |
ttgttttaaggaataaatgtaaggcttattgccatttgattctaattacacgtgttgaattagtttatatatgctaaggttatcatcatgtagagagtat |
50361864 |
T |
|
| Q |
300 |
atgcatac |
307 |
Q |
| |
|
|||||||| |
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|
| T |
50361865 |
atgcatac |
50361872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 12605039 - 12604916
Alignment:
| Q |
1 |
tgtcatatgggtaggtgatccggctgagtcacagagagtgattcaatttgaggtaagtaaattatttagatgttctgctcctaaagaacttgaagctctt |
100 |
Q |
| |
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|||||||| | |||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||| | ||| |||| |
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| T |
12605039 |
tgtcatatagataggtgattcggctgagtcacagagagtgattatatttgaggtatgtaaattacgtagatgttctgctcctaaagaaaataaagttctt |
12604940 |
T |
|
| Q |
101 |
gaaaattcaatgtcacattgagaa |
124 |
Q |
| |
|
|||||||||||||| |||||||| |
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|
| T |
12604939 |
caaaattcaatgtcagattgagaa |
12604916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 171 - 307
Target Start/End: Complemental strand, 12604892 - 12604759
Alignment:
| Q |
171 |
gatttttcgaatgtgctttattttattgatttgttttaaggaataaatgta-ggcttattgccatttgattct-aattacacgtgttgaattagtttata |
268 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| ||| |||| ||| || | ||||||||||||||||||| | ||||||||||||| |||||||| |
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| T |
12604892 |
gatttttcgactgtgctttattttgttgatttatttgaaggtatagttgcaaggcttattgccatttgatttttaattacacgtgtt-----agtttata |
12604798 |
T |
|
| Q |
269 |
tatgctaaggttatcatcatgtagagagtatatgcatac |
307 |
Q |
| |
|
|||||||||||||||| ||||| |||| | |||||||| |
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|
| T |
12604797 |
tatgctaaggttatcactatgtatagagcacatgcatac |
12604759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 10451870 - 10451993
Alignment:
| Q |
1 |
tgtcatatgggtaggtgatccggctgagtcacagagagtgattcaatttgaggtaagtaaattatttagatgttctgctcctaaagaacttgaagctctt |
100 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||| | ||| |||| |
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|
| T |
10451870 |
tgtcatatggataggtgattcgactgagtcacagagagtgattatatttgaggtatgtaaattacgtagatgttctgctcctaaagaaaataaagttctt |
10451969 |
T |
|
| Q |
101 |
gaaaattcaatgtcacattgagaa |
124 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
10451970 |
caaaattcaatgtcacattgagaa |
10451993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 171 - 307
Target Start/End: Original strand, 10452017 - 10452150
Alignment:
| Q |
171 |
gatttttcgaatgtgctttattttattgatttgttttaaggaataaatgta-ggcttattgccatttgatt-ctaattacacgtgttgaattagtttata |
268 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| ||| |||| ||| || | ||||||||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
10452017 |
gatttttcgattgtgctttattttgttgatttatttgaaggtatagttgcaaggcttattgccatttgatttctaattacacgtgtt-----agtttata |
10452111 |
T |
|
| Q |
269 |
tatgctaaggttatcatcatgtagagagtatatgcatac |
307 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||||||| |
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|
| T |
10452112 |
tatgctaaggttatcattatgtatagagtacatgcatac |
10452150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 30997915 - 30997828
Alignment:
| Q |
1 |
tgtcatatgggtaggtgatccggctgagtcacagagagtgattcaatttgaggtaagtaaattatttagatgttctgctcctaaagaa |
88 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||| |
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|
| T |
30997915 |
tgtcatatggataggtgattcggctgagtcacagagagtgattatatttgaggtatgtaaattacgtagatgttctgctcttaaagaa |
30997828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 13862346 - 13862300
Alignment:
| Q |
117 |
attgagaagtgtataaattaatgttatacttatgcttaataccaaca |
163 |
Q |
| |
|
|||||||| ||||||||||||| | ||||||||||||||||||||| |
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|
| T |
13862346 |
attgagaactgtataaattaatactgtacttatgcttaataccaaca |
13862300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 52527642 - 52527596
Alignment:
| Q |
117 |
attgagaagtgtataaattaatgttatacttatgcttaataccaaca |
163 |
Q |
| |
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|||||||| ||||||||||||| | ||||||||||||||||||||| |
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|
| T |
52527642 |
attgagaactgtataaattaatactgtacttatgcttaataccaaca |
52527596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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