View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3058_low_7 (Length: 306)
Name: NF3058_low_7
Description: NF3058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3058_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 28025909 - 28025631
Alignment:
| Q |
20 |
caattaacccacaaaattgtgttagtgcccgacttgtacaccttaannnnnnnctacatcctttaatactccattttccctctatatctctattcttatc |
119 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28025909 |
caattaacccacaaaattgtgtacgtgcccgacttgtacaccttaatttttttctacatcctttaatactccattttccctctatatctctattcttatc |
28025810 |
T |
|
| Q |
120 |
aaatcactaatatatcactttcataacatcactctccttttctttttctccctagtagtagattggtttttgggtgtaaaatattattttccaattgtta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28025809 |
aaatcactaatatatcactttcataacatcactctccttttctttttctccctagtagtagattggtttttgggtgtaaaatattattttccaattgtta |
28025710 |
T |
|
| Q |
220 |
ataatgctagctgagacaaagttaatttattgcatgtgtgtttgtagggtttactacgcctgagggaaccatctgtgct |
298 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28025709 |
ataatgctagctgagacaaagttaatttattgcatatgtgtttgtagggtttactacgcctgagggaaccatctgtgct |
28025631 |
T |
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