View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3058_low_8 (Length: 301)

Name: NF3058_low_8
Description: NF3058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3058_low_8
NF3058_low_8
[»] chr4 (3 HSPs)
chr4 (168-259)||(46407867-46407958)
chr4 (11-75)||(46408049-46408113)
chr4 (108-170)||(46407986-46408048)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 46407958 - 46407867
Alignment:
Q  168 tttcttcttgatagaaaattataaattccagtaaataagaatatatttcattcaaacaaaaatctttttaaattaatattacccctttaagt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46407958 tttcttcttgatagaaaattataaattccagtaaataagaatatatttcattcaaacaaaaatctttttaaattaatattacccctttaagt 46407867  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 46408113 - 46408049
Alignment:
Q  11 cacagaatttggcaccacaatttcatataaaatctaagatattggttatgtagatcttctcactt 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46408113 cacagaatttggcaccacaatttcatataaaatctaagatattggttatgtagatcttctcactt 46408049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 46408048 - 46407986
Alignment:
Q  108 ttttaacttctcttctatcttcatctcacacacctaacacttttgataggagaatgtagtttt 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46408048 ttttaacttctcttctatcttcatctcacacacctaacacttttgataggagaatgtagtttt 46407986  T

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