View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3059_high_11 (Length: 280)
Name: NF3059_high_11
Description: NF3059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3059_high_11 |
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| [»] scaffold0143 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 44546184 - 44545938
Alignment:
| Q |
13 |
aaaataaacaaagagaaagagtgagagagnnnnnnnttgttatcacaagttgcaaaaatatatataaattgaactttatttccaaaaacaaattttacac |
112 |
Q |
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| T |
44546184 |
aaaataaacaaagagaaagagtgagagagaaaaaaattgttatgacaagttgcaaaaatata----aattgaactttatttccaaaaacaaattttacac |
44546089 |
T |
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| Q |
113 |
tgtcatctagtataatcatctcttcaaatcactccactacatgtcactttaatgatatgacatgcataaatagttgattcatattagatgttagagtaaa |
212 |
Q |
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| T |
44546088 |
tgtcatctagtataatcatctcttcaaatcactccactacatgtcactttaatgatatgacatgcatcaatagttgattcatattagatgttagagtaaa |
44545989 |
T |
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| Q |
213 |
ctacgaataaattcattaaacttttgataaaaacaagaataggtaaagaat |
263 |
Q |
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| T |
44545988 |
ctacgaataaattgattaaacttttgataaaaacaagaataggtaaagaat |
44545938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 33481370 - 33481291
Alignment:
| Q |
136 |
tcaaatcactccactacatgtcactttaatgatatgacatgcataaatagttgattcatattagatgttagagtaaacta |
215 |
Q |
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| T |
33481370 |
tcaaatcaccccactacactacacttacatggtatgacgtggagaaatagttaattcatattagatgttagtgtaaacta |
33481291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0143 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0143
Description:
Target: scaffold0143; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 5311 - 5390
Alignment:
| Q |
136 |
tcaaatcactccactacatgtcactttaatgatatgacatgcataaatagttgattcatattagatgttagagtaaacta |
215 |
Q |
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| T |
5311 |
tcaaatcaccccactacactacacttacatggtatgacgtggagaaatagttaattcatattagatgttagtgtaaacta |
5390 |
T |
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