View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3059_high_3 (Length: 565)
Name: NF3059_high_3
Description: NF3059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3059_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 349 - 518
Target Start/End: Original strand, 35887637 - 35887805
Alignment:
| Q |
349 |
gaagagattagctaacggatttgacccgatttttcgaagcccaaaaatgtagatagtttggttacatagcaccaagcccatcatggaagattatataata |
448 |
Q |
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| T |
35887637 |
gaagggattagctaacggatttgacccgatttttcgaaacccaaaaatgtagatagtttggttacatagcaccaagctcatcatggaagattatataata |
35887736 |
T |
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| Q |
449 |
agatacccggtatccctacaattacacccccctcccctgcaaaaaaacgtcattcacccctattagttgt |
518 |
Q |
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| T |
35887737 |
agatacccggtatccctgcaattaca-ccccctcccctgcaaaaaaacgtcattcacccctattagttgt |
35887805 |
T |
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Target: chr8; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 35887308 - 35887492
Alignment:
| Q |
20 |
gaagatttatttttcttcacaaaaaatctcttaatatggacactaaagagtatgcagaccgaaaattttaaagagtttagataaattcgccaatcataat |
119 |
Q |
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| T |
35887308 |
gaagatttatttttcttcacaaaaaatctcttaatatggacactaaagagtatgccaaccgaaaattttagagagtttagataaattcgccaatcataaa |
35887407 |
T |
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| Q |
120 |
tatcctcttcttattctcaacaaaaacaccttgaaatgatatgaacaatttctgtcttttnnnnnnnttcccttccgcccaaatt |
204 |
Q |
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| T |
35887408 |
tatcctcttcttattctcaacaaaaacaccttgaaatgatatgaataatttctatctttttccccccttcccttccgcccaaatt |
35887492 |
T |
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