View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3059_high_4 (Length: 550)
Name: NF3059_high_4
Description: NF3059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3059_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 126 - 534
Target Start/End: Complemental strand, 34889062 - 34888652
Alignment:
| Q |
126 |
ttcctcccattttcgccatataatccgtacattggtatgcttgccatttcgccaaaatgtccgcacattggttgctttctttgtgagtccacactaacga |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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|
| T |
34889062 |
ttcctcccattttcgccatataatccgtacattggtatgcttgccatttcgccaaaatgtccgcacattggttgctttctttgtgagtccacactgagaa |
34888963 |
T |
|
| Q |
226 |
aacaatctagtctctagacatatcctccttgatattatccgttatctcaacatatttatgagactgagatgttgagtcttgaatcaaacgtgtagcgtgc |
325 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34888962 |
aacaatccagtctctagacataacctccttgatactatcttttatctcaacatatttatgagattgagatgttgagtcttgaatcaaacgtgtagcgtgt |
34888863 |
T |
|
| Q |
326 |
caacaatcagttctgcaactcacgtctcgatagccaagttcccaagcgaacattagtccaatctctatgccttttaattcagcttctacgctgtcagcac |
425 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34888862 |
caacaatcaattctgcaactcacgtctcgatagccaagttcccaagcgaacattagtccaatctctatgccttttaattcagcttctaggctgtcagcac |
34888763 |
T |
|
| Q |
426 |
aatcaatgtgtccactaactccaacaatccatgagccggtgtgatctcgaattaaacctcc--aacataccctaccagagcttcagagataactctcatc |
523 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| |
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| T |
34888762 |
aatcaatgtatccactaactccaacaatccatgagccggtgtgatctcgaattaaacctccaaaacatgccctaccagagcttccgagataactctcatc |
34888663 |
T |
|
| Q |
524 |
aacgtttaaag |
534 |
Q |
| |
|
||||||||||| |
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|
| T |
34888662 |
aacgtttaaag |
34888652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 8e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 9 - 488
Target Start/End: Complemental strand, 34035030 - 34034548
Alignment:
| Q |
9 |
gaaatgaaactataaattacgctcttacatatgtagttctcttggcatcactcgaaagtaaagaagataagcaaggtggtggctttgaaaataatattgt |
108 |
Q |
| |
|
|||| |||||||||||||| ||||| | |||||| | ||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||| | |||| |
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|
| T |
34035030 |
gaaaagaaactataaattatgctctaatatatgttgctctcttggcatcactagaaagtaaagaagataagtaaggtagtggctttggaaaca---ttgt |
34034934 |
T |
|
| Q |
109 |
aaaactattctcggtgattcctcccattttcgccatataatccgtacattggt--atgcttgc---cattt-cgccaaaatgtccgcacattggttgctt |
202 |
Q |
| |
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| |||| | |||| ||| ||||||||| |||||| |||||| | |||||| || |||| ||||| ||||| || |||||||||||||||||| |
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|
| T |
34034933 |
tacactacccacggtaattgctcccatttctgccataaaatccgcatattggtcgatttttgctcccattttcgccataaaatccgcacattggttgctt |
34034834 |
T |
|
| Q |
203 |
tctttgtgagtccacactaacgaaacaatctagtctctagacatatcctccttgatattatccgttatctcaacatatttatgagactgagatgttgagt |
302 |
Q |
| |
|
||| | | |||||| |||| |||||||| | |||||||||| | |||||||||| | ||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
34034833 |
tctctttcagtccaatttaacaaaacaatccaatctctagacacaagctccttgatactctccgtaatctcaacatatttatgaggctgagatgttgagt |
34034734 |
T |
|
| Q |
303 |
cttgaatcaaacgtgtagcgtgccaacaatcagttctgcaactcacgtctcgatagccaagttcccaagcgaacattagtccaatctctatgccttttaa |
402 |
Q |
| |
|
||||| |||| | |||| | |||||||||| |||| ||||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||||| |
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|
| T |
34034733 |
cttgactcaataatatagctttccaacaatcacttctacaactcacgtctcgatagccacaatcccaagccaaccttagtccactctctatgccttttaa |
34034634 |
T |
|
| Q |
403 |
ttcagcttctacgctgtcagcacaatcaatgtgtccactaactccaacaatccatgagccggtgtgatctcgaattaaacctccaa |
488 |
Q |
| |
|
|||||||| |||||||||| || | |||||| |||||||| ||| | ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
34034633 |
ttcagcttgtacgctgtcaacaataccaatgtatccactaaatcctaaaatccatgagccgttgtgatctcgaattaaacctccaa |
34034548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 270 - 487
Target Start/End: Complemental strand, 45632775 - 45632557
Alignment:
| Q |
270 |
tctcaacatatttatgagactgagatgttgagtcttgaatcaaacgtgtagcgtgccaacaatcagttctgcaactcacgtctcgatagccaagttccca |
369 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||| | |||| | | ||||||| ||||||||||||||||| | ||||| | |||||| |
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|
| T |
45632775 |
tctcaacatatttattaggctgagatgttgagtcttgaatcaaagatatagcctccatacaatcacttctgcaactcacgtcttggtagccgatttccca |
45632676 |
T |
|
| Q |
370 |
agcgaacattagtccaatctctatg-ccttttaattcagcttctacgctgtcagcacaatcaatgtgtccactaactccaacaatccatgagccggtgtg |
468 |
Q |
| |
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||| ||||||| ||||| |||| ||| ||| |||| ||||| ||||||||| ||| |||||||||||||| ||| || ||||||||||||||||| |
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|
| T |
45632675 |
agctaacattaatccaaatattatgccctattagttcaaattctaaactgtcagcaaaattaatgtgtccactaaatcctacgatccatgagccggtgtg |
45632576 |
T |
|
| Q |
469 |
atctcgaattaaacctcca |
487 |
Q |
| |
|
||||| | |||||| |||| |
|
|
| T |
45632575 |
atctcaagttaaacttcca |
45632557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 270 - 487
Target Start/End: Original strand, 2658478 - 2658696
Alignment:
| Q |
270 |
tctcaacatatttatgagactgagatgttgagtcttgaatcaaacgtgtagcgtgccaacaatcagttctgcaactcacgtctcgatagccaagttccca |
369 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||| | |||| | | ||||||| ||||||||||||||||| | ||||| | |||||| |
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|
| T |
2658478 |
tctcaacatatttattaggctgagatgttgagtcttgaatcaaagatatagcctccatacaatcacttctgcaactcacgtcttggtagccgatttccca |
2658577 |
T |
|
| Q |
370 |
agcgaacattagtccaatctctatg-ccttttaattcagcttctacgctgtcagcacaatcaatgtgtccactaactccaacaatccatgagccggtgtg |
468 |
Q |
| |
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||| ||||||| ||||| |||| ||| ||| |||| ||||| ||||||||| ||| |||||||||||||| ||| || ||||||||||||||||| |
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| T |
2658578 |
agctaacattaatccaaatattatgccctattagttcaaattctaaactgtcagcaaaattaatgtgtccactaaatcctacgatccatgagccggtgtg |
2658677 |
T |
|
| Q |
469 |
atctcgaattaaacctcca |
487 |
Q |
| |
|
||||| | |||||| |||| |
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|
| T |
2658678 |
atctcaagttaaacttcca |
2658696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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