View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3059_high_5 (Length: 491)
Name: NF3059_high_5
Description: NF3059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3059_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 4433700 - 4433242
Alignment:
| Q |
18 |
atttgtggatgg--agatcaaacataaggagaaggatgaggataatggtgttatgatcggtgatgaaggaggacaatggtggtggtgaccgataatggag |
115 |
Q |
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| T |
4433700 |
atttgtggatggggagatcaaacataaggagaaggatgaggataatggtgttatgatcggtgatgaaggaggacaatggtggtggtgaccgataatggag |
4433601 |
T |
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| Q |
116 |
gtggtgattgatgatagggtggtggctgatgtaagaaaagagaaagttggnnnnnnnnnnnnnctttaaaaataataatatgtatatgtgtacaataaaa |
215 |
Q |
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| T |
4433600 |
gtggtgattgatgatagggtggtggctgatgtaagaaaagagaaagttggtttttggttttttctttaaaaataataatatgtataggtgtacaataaaa |
4433501 |
T |
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| Q |
216 |
tacggttatgtctcgtatttgtccacaaatatgtgtttatgtgttttctttacttatgtaaatcttatataacatatttatttattatccttattcttaa |
315 |
Q |
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| T |
4433500 |
tacggttatgtctcgtattggtccacaaatatgtgtttatgtgctttctttacttatgtaaatcttatataacatgtttattttttatccttattcttaa |
4433401 |
T |
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| Q |
316 |
cttagaatgtgtacaatattcttttaagcaagaacctacccgtgcttaatttaacnnnnnnntaaaacagaaactacccgtgcatgcacgagtctcccac |
415 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
4433400 |
gttagaatgtgtacaatattctttcaagcaagaacctacccgtgcttaatttaacaaaaaaataaaagagaaactacccgtgcatgcacgagtctcccac |
4433301 |
T |
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| Q |
416 |
cacttattcttttccttttagaatagaagaacacaaacatgcactgtatataaacagta |
474 |
Q |
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| T |
4433300 |
cacttgttcttttccttttagaatagaagagcacaaacatgcactgtatataaacagta |
4433242 |
T |
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