View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3059_low_1 (Length: 846)
Name: NF3059_low_1
Description: NF3059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3059_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 457 - 830
Target Start/End: Original strand, 53487733 - 53488106
Alignment:
| Q |
457 |
attgtcattaaagctgctctaagaaatattttgaatcttgtatgagtatggtttgccagaaattaatgtagattcaaagacaggaannnnnnngaatagc |
556 |
Q |
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| T |
53487733 |
attgtcattaaagctgctctaagaaatattttgaatcttgtatgagtatggtttgccagaacttaatgtagattcaaagacaagaatttttttgaaaagc |
53487832 |
T |
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| Q |
557 |
ctcaatatcttccatcatttcaatgtatctttttcaggaaataattctaatgttgcatcctcttcttcattgtcagggttttttattttgaaaatgttca |
656 |
Q |
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| T |
53487833 |
ctcaatatcttccatcatttcaatgtatctttttcaggaaataattctaatgttgcatcctcttctttattgtcagggttttttattttgaaaatgttca |
53487932 |
T |
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| Q |
657 |
ctgtgaacattcattctccttagcctcaaatcatcaaagttgtgatttggcttcttcatatcactggttggtccgttgaattttaatacaaacaaatcat |
756 |
Q |
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| T |
53487933 |
ctgtgaacattcattctccttagcctcaaatcatcaaagttgtgatttggcttcttcatatcactggttggtccgttgaattttaatacaaacaaatcat |
53488032 |
T |
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| Q |
757 |
ctgcttccaataactcctcatgtggaggcattttaaaaaatcaagatgcaaatttcatttgctgctttgctaag |
830 |
Q |
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| T |
53488033 |
ctgcttccaataactcctcatgtggaggcattttaaaaaatcaagatgcaaatttcatttgctgctttgctaag |
53488106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 53485542 - 53485772
Alignment:
| Q |
8 |
cgaagaaaatcaggaaaaaatatcatttccgctattctggaacctaacacaaactcggcgtgagttaaatcacgttgacttgtaatgagtgtgccttaac |
107 |
Q |
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| T |
53485542 |
cgaaggaaattagggaaaaatatcatttctgctgttctagaacctaacacagacttggcgtgagttaagtcacgttgacttgtaatgagtgtgacttaac |
53485641 |
T |
|
| Q |
108 |
tcacgctgagtttggcgtgatttatatcatgttggttttaacacatgcataagttgagtcatgcaaggggttttcatttgaccatccatgtaaaaggaat |
207 |
Q |
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| T |
53485642 |
tcacgctaagtttggcgtgatttatatcatgttggttttaacacatgcataagttgagtcatgctaggggttctcatttgaccatccatgtaaaaggaat |
53485741 |
T |
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| Q |
208 |
tttgtactggtgaatagtgagaaagggagtt |
238 |
Q |
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| T |
53485742 |
tttgtactggtgaatagtgagaaagggagtt |
53485772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 53486016 - 53486105
Alignment:
| Q |
255 |
gaaaataaaatatatttataa--gattaaacgaatgaaggaaaa-tatttatcgctcctataattgcagtataaaaacatttactctctc |
341 |
Q |
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| T |
53486016 |
gaaaagaaaatgtatttataaaagattaaacgaatgaaggaaaaatatttatcgctcctataattgcagtataaaaacatttactctctc |
53486105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 410 - 452
Target Start/End: Original strand, 53487664 - 53487706
Alignment:
| Q |
410 |
gttcatgtactttttcactagagcatatttggactctatgtaa |
452 |
Q |
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| T |
53487664 |
gttcatgtactttttcactagagcatatttggactctatgtaa |
53487706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 24736211 - 24736162
Alignment:
| Q |
66 |
cgtgagttaaatcacgttgacttgtaatgagtgtgccttaactcacgctg |
115 |
Q |
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| T |
24736211 |
cgtgagttaagtcacgttgatgtgtaatgagtgtgacttaactcacgctg |
24736162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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