View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3059_low_11 (Length: 303)

Name: NF3059_low_11
Description: NF3059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3059_low_11
NF3059_low_11
[»] chr2 (1 HSPs)
chr2 (1-303)||(8404722-8405030)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 8404722 - 8405030
Alignment:
Q  1 ttttcttaattaccacacttgtcttggatgcttttggaacagaaaataaacaaagtcttggtggttttgggaaattgatacagcatgtgattctattcaa 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8404722 ttttcttaattaccacacttgtcttagatgcttttggaacagaaaataaacaaagtcttggtagttttgggaaattgatacagcatgtgattctattcaa 8404821  T
Q  101 cgatagatgnnnnnnnnnnnnnnnnnnnttagatgaaggtaaacagttaagtggtgatgaagattgtgatgaatgcatgttgcaaatattttgtgtttag 200  Q
    |||||||||                   ||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||    
T  8404822 cgatagatgagatgaagaagaagaagaattagatgaaggtaaacagttaagtggtgatgaaaattttaatgaatgcatgttgcaaatattttgtgtttag 8404921  T
Q  201 ccttttgattgaagattttagtatatgtatatatttatacaaa----taactaactagaaaagaaggtgctggat-cggaaacattaacatgt-ggggtc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  8404922 ccttttgattgaagattttagtatatgtatatatttatacaaataattaactaactagaaaagaaggtgctggatacggaaacattaacatgtgggggtc 8405021  T
Q  295 cagtttacc 303  Q
    |||||||||    
T  8405022 cagtttacc 8405030  T

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