View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3059_low_6 (Length: 475)
Name: NF3059_low_6
Description: NF3059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3059_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 137 - 412
Target Start/End: Complemental strand, 34289525 - 34289250
Alignment:
| Q |
137 |
cttgtgaaagacttttatttggaattgattttagtgttttatcaataatacaaatgacccctcgatttgatttttgctaaaatttaatgcattggtattt |
236 |
Q |
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| T |
34289525 |
cttgtgtaagacttttatttggaattgattttactgttttatcaataatacaaatgacccctcgatttgatttttgctaaaatttaatgcattggtattt |
34289426 |
T |
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| Q |
237 |
atatttttatataagaaaaaattatattaaagtgctaacattacattggtttgagtgtaacaaacttgaatttcttataaaaagtcttaagttcggatct |
336 |
Q |
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| T |
34289425 |
atatttttatataagaaaaaattatattaaagtgccaacattacattggtttgagtgtaacaaacttaaatttcttataaaaagtcttaagttcgaatct |
34289326 |
T |
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| Q |
337 |
tgcgaatggagaaaatgtcgtttcgaaactcggtgttgaattaggttagtgttataattaaggtctgtaatactaa |
412 |
Q |
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| T |
34289325 |
tgcgaatggagaaaatgtcgtttggagagtctgtgttgaattaagttagtgttataattaaggtctgtaacactaa |
34289250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 148 - 330
Target Start/End: Complemental strand, 34301900 - 34301716
Alignment:
| Q |
148 |
cttttatttggaattgattttagtgttttatcaataatacaaatgacccctcgatttgatttttgctaaaattta---atgcattggtatttatattttt |
244 |
Q |
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| T |
34301900 |
cttttatttggaattgattttagtgttttatcaattaaactaacgacccttcaatttgatttttactaagatttatttatgcattcgtatttatattttt |
34301801 |
T |
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| Q |
245 |
atataagaaaaaattatattaaagtgctaacattacattggtttgagtgtaacaaacttgaatttcttataaaaagtcttaagttc |
330 |
Q |
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| T |
34301800 |
atataag-aaaaattatagtgaaatggcaacattgcattggtttgcgtgtaacaagcttgaatcgcttaagaaaagtcttaagttc |
34301716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 34289644 - 34289591
Alignment:
| Q |
18 |
agttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
71 |
Q |
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| T |
34289644 |
agttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
34289591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 34302031 - 34301978
Alignment:
| Q |
18 |
agttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
71 |
Q |
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| T |
34302031 |
agttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
34301978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 470
Target Start/End: Complemental strand, 34289252 - 34289212
Alignment:
| Q |
430 |
taattctccttccaatccctcatgtaattattcttctcact |
470 |
Q |
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| T |
34289252 |
taattctccttcaaatccctcatgtaattattcttttcact |
34289212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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