View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3059_low_7 (Length: 443)
Name: NF3059_low_7
Description: NF3059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3059_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 1458920 - 1458494
Alignment:
| Q |
1 |
aaactacgcaactaacatcgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaa |
100 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1458920 |
aaactacgcgactaacattgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgtatgctcaattttgaa |
1458821 |
T |
|
| Q |
101 |
aagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1458820 |
aagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatctggatgtccagattctacaact |
1458721 |
T |
|
| Q |
201 |
ttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgctgttaaagtgacatattgatccagtcaacaaactgtaactgtaact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1458720 |
ttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgccgttaaagtgacatattgatccagtcaacaaactgtaactgtaact |
1458621 |
T |
|
| Q |
301 |
tcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcatttgtaatctgtttagagaaccc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1458620 |
tcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcatttgtaatctgtttagagaaccc |
1458521 |
T |
|
| Q |
401 |
taccatccactcgcgaggggatcattt |
427 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
1458520 |
taccatccactcgcgaggggatcattt |
1458494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 2428627 - 2428201
Alignment:
| Q |
1 |
aaactacgcaactaacatcgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaa |
100 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2428627 |
aaactacgcgactaacattgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgtatgctcaattttgaa |
2428528 |
T |
|
| Q |
101 |
aagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
2428527 |
aagtatttgagctgcagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccagattctacaact |
2428428 |
T |
|
| Q |
201 |
ttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgctgttaaagtgacatattgatccagtcaacaaactgtaactgtaact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2428427 |
ttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgccgttaaagtgacatattgatccagtcaacaaactgtaactgtaact |
2428328 |
T |
|
| Q |
301 |
tcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcatttgtaatctgtttagagaaccc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2428327 |
tcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcatttgtaatctgtttagagaaccc |
2428228 |
T |
|
| Q |
401 |
taccatccactcgcgaggggatcattt |
427 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2428227 |
taccatccactcgcgaggggatcattt |
2428201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 46 - 252
Target Start/End: Complemental strand, 2434943 - 2434740
Alignment:
| Q |
46 |
taccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagt |
145 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| || || || ||| |||||||||||||||||||||||||| |
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|
| T |
2434943 |
taccaagaattccggtataataggaaagtgggacatcattgtgctcaattttgaaaa---ttccagttgtaggaaccaaactatactcttcccatttagt |
2434847 |
T |
|
| Q |
146 |
cattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagtt |
245 |
Q |
| |
|
| | ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |||||| |
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|
| T |
2434846 |
aagactccaaactgaatcatctttcttataatctggatgtccagattctacaactttagacactccaaaacctgtcagtggctgcaattactcgtcagtt |
2434747 |
T |
|
| Q |
246 |
agtagct |
252 |
Q |
| |
|
||||||| |
|
|
| T |
2434746 |
agtagct |
2434740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 116 - 249
Target Start/End: Complemental strand, 2431491 - 2431358
Alignment:
| Q |
116 |
agggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacactcctaat |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
2431491 |
agggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccagattctacaactttagacactccaaaa |
2431392 |
T |
|
| Q |
216 |
cctgtcaatggctgcaattactcatcagttagta |
249 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| |
|
|
| T |
2431391 |
cctgtcagtggctgcaattactcgtcagttagta |
2431358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 2498021 - 2498204
Alignment:
| Q |
25 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
124 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || ||||||||| |
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|
| T |
2498021 |
aaattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaa |
2498120 |
T |
|
| Q |
125 |
actatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
208 |
Q |
| |
|
|| ||||||||||||||| | |||||||||||||||| ||| |||||||| |||||||| ||||| | ||||||||||| |
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|
| T |
2498121 |
gctgtactcttcccatttacagaatccccaaactaaatcaccttccttataatcaggatgtcctgattcaaggactttagacac |
2498204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 2517831 - 2518014
Alignment:
| Q |
25 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
124 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||| || ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2517831 |
aaattgaaattgttgaatacataccaagaattccagtatagtacgaaagaggaacatctgtgtgttcaattttgaaaagtatttgagctgcagggatcaa |
2517930 |
T |
|
| Q |
125 |
actatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
208 |
Q |
| |
|
|| ||||||||||| ||||| | ||||| ||||||||| ||| |||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
2517931 |
gctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatctttgtgtccagattccacaactttagacac |
2518014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 41 - 208
Target Start/End: Original strand, 2506970 - 2507137
Alignment:
| Q |
41 |
atacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccat |
140 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || ||||| | |||||||||||||||| ||||||| || ||||||| ||| || ||||||||||| |
|
|
| T |
2506970 |
atacatacctagaattccagtatagtaggaaagaggaacatcagtatgctcaattttgaaatgtatttgtgccgcagggatcaagctgtactcttcccaa |
2507069 |
T |
|
| Q |
141 |
ttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
208 |
Q |
| |
|
||||| || ||||| |||| |||| ||| |||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
2507070 |
ttagttatcccccacactatatcaccttccttataatctttgtgtccagattccacaactttagacac |
2507137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 2513614 - 2513797
Alignment:
| Q |
25 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
124 |
Q |
| |
|
||||||||||||| || ||||||| |||||||| |||||||||||||| || ||||| | ||||||||||| ||| ||||||| |||||||||| ||| |
|
|
| T |
2513614 |
aaattgaaattgtggatcacataccaagaattcctgtatagtaggaaagaggaacatcagtgtgctcaattttaaaatgtatttgtgctgcagggatcaa |
2513713 |
T |
|
| Q |
125 |
actatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
208 |
Q |
| |
|
|| ||||||||||| ||||| || ||||| || | |||| ||| ||||||| | ||||||||||||| |||||||||||| |
|
|
| T |
2513714 |
gctgtactcttcccaattagttatcccccacacgatatcaccttctttataatctttgtgtccagattctagaactttagacac |
2513797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 50703468 - 50703557
Alignment:
| Q |
87 |
tgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataat |
177 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||||| || ||||||||||||||| | |||||||||| ||||| ||| |||||||| |
|
|
| T |
50703468 |
tgctcaattttgaaaagtatttgagat-aaggtaccaagctgtactcttcccatttacagaatccccaaacttaatcaccttccttataat |
50703557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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