View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3059_low_8 (Length: 423)

Name: NF3059_low_8
Description: NF3059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3059_low_8
NF3059_low_8
[»] chr3 (18 HSPs)
chr3 (20-372)||(35058009-35058362)
chr3 (263-375)||(3845193-3845304)
chr3 (76-128)||(40147885-40147937)
chr3 (76-131)||(25359606-25359661)
chr3 (76-131)||(52364049-52364104)
chr3 (137-171)||(31708221-31708255)
chr3 (382-418)||(35058405-35058441)
chr3 (76-111)||(41115414-41115449)
chr3 (74-120)||(1441424-1441470)
chr3 (263-360)||(38022330-38022424)
chr3 (78-131)||(8801990-8802043)
chr3 (76-129)||(35058359-35058412)
chr3 (76-129)||(44771692-44771745)
chr3 (137-169)||(5406973-5407005)
chr3 (82-129)||(32523374-32523422)
chr3 (137-169)||(40147834-40147866)
chr3 (76-111)||(49634091-49634127)
chr3 (79-131)||(54596819-54596871)
[»] chr1 (34 HSPs)
chr1 (79-171)||(30557505-30557605)
chr1 (76-171)||(1514341-1514446)
chr1 (74-169)||(3016158-3016263)
chr1 (80-129)||(11049252-11049301)
chr1 (74-135)||(47321935-47321995)
chr1 (82-172)||(51500830-51500915)
chr1 (75-171)||(28083870-28083976)
chr1 (79-129)||(30850433-30850483)
chr1 (80-129)||(3515820-3515869)
chr1 (76-129)||(28287370-28287423)
chr1 (76-129)||(48549046-48549099)
chr1 (76-131)||(50571282-50571337)
chr1 (80-129)||(6021806-6021855)
chr1 (85-171)||(7524120-7524216)
chr1 (76-129)||(8381964-8382017)
chr1 (76-128)||(20026199-20026251)
chr1 (81-130)||(36780149-36780199)
chr1 (81-127)||(40663015-40663061)
chr1 (79-129)||(47892422-47892472)
chr1 (136-169)||(213265-213298)
chr1 (76-129)||(7790676-7790729)
chr1 (76-129)||(10324972-10325025)
chr1 (300-361)||(24587838-24587899)
chr1 (84-129)||(27849145-27849190)
chr1 (74-131)||(34387725-34387782)
chr1 (76-129)||(37522944-37522997)
chr1 (136-168)||(213522-213554)
chr1 (137-169)||(1416205-1416237)
chr1 (89-129)||(31362239-31362279)
chr1 (78-129)||(33693020-33693072)
chr1 (137-169)||(34915135-34915167)
chr1 (75-131)||(38797661-38797717)
chr1 (193-253)||(40352493-40352553)
chr1 (135-167)||(47053471-47053503)
[»] chr7 (15 HSPs)
chr7 (76-126)||(41386852-41386902)
chr7 (271-372)||(27571763-27571863)
chr7 (76-129)||(38123700-38123753)
chr7 (57-117)||(17111836-17111896)
chr7 (77-127)||(28725088-28725138)
chr7 (76-171)||(45557363-45557468)
chr7 (76-129)||(27571860-27571913)
chr7 (76-129)||(30182330-30182383)
chr7 (136-169)||(40561742-40561775)
chr7 (76-131)||(22195862-22195917)
chr7 (76-127)||(29842087-29842138)
chr7 (327-365)||(12306933-12306971)
chr7 (76-110)||(26984533-26984567)
chr7 (76-167)||(40491576-40491677)
chr7 (267-335)||(38123769-38123836)
[»] chr6 (24 HSPs)
chr6 (57-130)||(6895983-6896056)
chr6 (76-169)||(4910906-4911009)
chr6 (76-136)||(6654117-6654177)
chr6 (76-127)||(765422-765473)
chr6 (76-171)||(16540105-16540210)
chr6 (76-129)||(5724664-5724717)
chr6 (76-171)||(25195348-25195451)
chr6 (263-364)||(1485238-1485339)
chr6 (60-130)||(31725758-31725828)
chr6 (76-124)||(7952748-7952796)
chr6 (76-171)||(3482044-3482149)
chr6 (76-129)||(1485180-1485233)
chr6 (76-129)||(30927041-30927094)
chr6 (74-129)||(852528-852583)
chr6 (76-131)||(28052947-28053002)
chr6 (263-365)||(5724721-5724822)
chr6 (137-171)||(8856376-8856410)
chr6 (300-365)||(579126-579191)
chr6 (76-125)||(25195848-25195897)
chr6 (76-129)||(26280603-26280656)
chr6 (329-365)||(2234305-2234341)
chr6 (193-241)||(16540241-16540289)
chr6 (137-169)||(34620955-34620987)
chr6 (137-169)||(34748392-34748424)
[»] chr4 (37 HSPs)
chr4 (80-166)||(16551959-16552053)
chr4 (76-173)||(32818350-32818457)
chr4 (263-372)||(2635056-2635164)
chr4 (75-131)||(8604654-8604710)
chr4 (76-131)||(55186994-55187049)
chr4 (74-131)||(9064227-9064284)
chr4 (76-131)||(50061660-50061715)
chr4 (81-135)||(49138791-49138845)
chr4 (58-127)||(1616371-1616439)
chr4 (76-131)||(9134608-9134663)
chr4 (74-129)||(35065059-35065114)
chr4 (76-171)||(21691194-21691299)
chr4 (263-317)||(33843584-33843637)
chr4 (76-171)||(53713543-53713648)
chr4 (76-129)||(14596687-14596740)
chr4 (76-129)||(30357510-30357563)
chr4 (76-129)||(31012773-31012826)
chr4 (76-111)||(29779106-29779141)
chr4 (258-337)||(29904120-29904198)
chr4 (78-129)||(41370044-41370095)
chr4 (88-131)||(45011884-45011927)
chr4 (77-127)||(1048716-1048766)
chr4 (79-129)||(26617469-26617519)
chr4 (76-129)||(32817486-32817540)
chr4 (141-171)||(35065136-35065166)
chr4 (327-372)||(33560655-33560700)
chr4 (76-129)||(37439143-37439196)
chr4 (76-129)||(43571476-43571529)
chr4 (136-169)||(55927754-55927787)
chr4 (135-171)||(1616457-1616493)
chr4 (193-233)||(1616523-1616563)
chr4 (189-217)||(5025588-5025616)
chr4 (76-111)||(11271589-11271625)
chr4 (81-129)||(16643981-16644029)
chr4 (135-171)||(45694681-45694717)
chr4 (263-335)||(49138956-49139027)
chr4 (135-171)||(52342023-52342059)
[»] chr8 (25 HSPs)
chr8 (78-171)||(32927892-32927995)
chr8 (76-129)||(4662937-4662990)
chr8 (76-129)||(15677850-15677903)
chr8 (78-171)||(35494990-35495093)
chr8 (76-131)||(13384686-13384741)
chr8 (76-135)||(32994270-32994329)
chr8 (76-131)||(38868496-38868551)
chr8 (76-131)||(44141082-44141137)
chr8 (76-171)||(26100128-26100233)
chr8 (76-171)||(37684403-37684508)
chr8 (57-129)||(38335895-38335967)
chr8 (76-131)||(7244633-7244688)
chr8 (76-129)||(10367993-10368046)
chr8 (78-171)||(16972046-16972149)
chr8 (42-129)||(18355882-18355970)
chr8 (74-133)||(6027079-6027138)
chr8 (78-129)||(10378232-10378283)
chr8 (74-133)||(11572488-11572547)
chr8 (76-131)||(36200164-36200219)
chr8 (76-110)||(7644562-7644596)
chr8 (137-171)||(9461520-9461554)
chr8 (189-231)||(41891804-41891846)
chr8 (135-169)||(43492221-43492255)
chr8 (76-129)||(30098908-30098961)
chr8 (135-171)||(32101140-32101176)
[»] chr5 (22 HSPs)
chr5 (74-129)||(9818730-9818785)
chr5 (74-131)||(18851114-18851171)
chr5 (76-131)||(38845441-38845496)
chr5 (74-128)||(6951340-6951394)
chr5 (76-171)||(42858106-42858211)
chr5 (76-131)||(14299328-14299383)
chr5 (259-299)||(2090182-2090222)
chr5 (76-131)||(39097244-39097299)
chr5 (81-167)||(8121547-8121633)
chr5 (76-129)||(18637282-18637335)
chr5 (76-131)||(11648080-11648135)
chr5 (76-131)||(34250383-34250438)
chr5 (274-372)||(10898626-10898723)
chr5 (137-171)||(11577603-11577637)
chr5 (77-123)||(22226276-22226322)
chr5 (76-125)||(22572442-22572491)
chr5 (327-372)||(29922582-29922627)
chr5 (80-129)||(36639939-36639988)
chr5 (263-299)||(22572557-22572593)
chr5 (74-126)||(31906255-31906307)
chr5 (300-372)||(34250435-34250507)
chr5 (261-317)||(38845650-38845705)
[»] chr2 (24 HSPs)
chr2 (74-129)||(42740973-42741028)
chr2 (265-358)||(33047650-33047742)
chr2 (76-127)||(43501123-43501174)
chr2 (79-129)||(2002729-2002779)
chr2 (76-171)||(33019138-33019243)
chr2 (76-129)||(30503207-30503260)
chr2 (135-171)||(16518845-16518881)
chr2 (78-129)||(42982544-42982595)
chr2 (76-133)||(12037059-12037116)
chr2 (61-171)||(13912770-13912890)
chr2 (193-244)||(12850727-12850778)
chr2 (76-111)||(21234577-21234612)
chr2 (137-171)||(680272-680306)
chr2 (204-258)||(22536146-22536200)
chr2 (140-169)||(1976848-1976877)
chr2 (74-131)||(3352072-3352129)
chr2 (136-169)||(15220845-15220878)
chr2 (74-131)||(31453379-31453436)
chr2 (136-169)||(40401627-40401660)
chr2 (76-109)||(43717322-43717355)
chr2 (137-169)||(8800682-8800714)
chr2 (137-185)||(9143044-9143092)
chr2 (135-171)||(11504044-11504080)
chr2 (139-167)||(42982615-42982643)
[»] scaffold0168 (3 HSPs)
scaffold0168 (76-131)||(31824-31879)
scaffold0168 (263-365)||(31719-31820)
scaffold0168 (139-171)||(31900-31932)
[»] scaffold0005 (1 HSPs)
scaffold0005 (76-129)||(220638-220691)
[»] scaffold0361 (1 HSPs)
scaffold0361 (137-169)||(14098-14130)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 35058009 - 35058362
Alignment:
Q  20 gtatgtttggttccactcttaaaattgattttgccattttggttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattctag 119  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  35058009 gtatgtttggttccactcttagaattgattttgccattttggttgttgttgaggataattgattctacatgaagctaggatttgtagcttttaattatag 35058108  T
Q  120 aattgattttcatacagttcaactcactttt-acatgaatgtatccaaacacataccctttttagtccggaactaaaatcaattctacaaaatcaattct 218  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  35058109 aattgattttcatacagttcaactcactttttacatgaatgtatccaaacacataccacttttagtccggaactaaaatcaattctacaaaatcaattct 35058208  T
Q  219 aacaaatttaattctccacaccacactgccaaacatacgcttaatgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaac 318  Q
    | |||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35058209 atcaaaattaattctccacaccgcacggccaaacatacgcttaatgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaac 35058308  T
Q  319 tgtttctcacatgtttgatggctcttgagtagaattgattttgcctcaagaatt 372  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35058309 tgtttctcacatgtttgatggctctcgagtagaattgattttgcctcaagaatt 35058362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 375
Target Start/End: Complemental strand, 3845304 - 3845193
Alignment:
Q  263 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgc 362  Q
    ||||||||||||| ||||| |||||  |||||||||| ||||||||| ||||||| || || | ||||||||| | | |||  ||||||||||||| |||    
T  3845304 tgtatgtttggttccacttttggagtaaccaaaattg-attctagaggtgtagaattgattttgacatgtttgtttgatctcaagtagaattgattctgc 3845206  T
Q  363 ctcaagaatttat 375  Q
    ||| |||||||||    
T  3845205 ctctagaatttat 3845193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 40147937 - 40147885
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattt 128  Q
    |||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||    
T  40147937 aattgattctacttcaagctagaatttggagcttttgattctagaattgattt 40147885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 25359661 - 25359606
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||||||||||||| ||| |||||||| |||| |||||| ||||||||||||    
T  25359661 aattgattctacttgaagttagaatttgtagttttttattctataattgattttca 25359606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 52364049 - 52364104
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    ||||| ||||||||||||||| ||||| |||||||| |||||| ||||||||||||    
T  52364049 aattgtttctacttgaagctatgatttatagcttttgattctataattgattttca 52364104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 31708255 - 31708221
Alignment:
Q  137 ttcaactcacttttacatgaatgtatccaaacaca 171  Q
    |||||||||||||||||||||||||||||||||||    
T  31708255 ttcaactcacttttacatgaatgtatccaaacaca 31708221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 35058405 - 35058441
Alignment:
Q  382 ttgattttaacactcaaatattattgttcatctcact 418  Q
    |||||||||||||||||||||||||||||| ||||||    
T  35058405 ttgattttaacactcaaatattattgttcaactcact 35058441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 41115449 - 41115414
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagctttt 111  Q
    |||||||||||||||||||||| |||||||||||||    
T  41115449 aattgattctacttgaagctagaatttgtagctttt 41115414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 1441470 - 1441424
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctaga 120  Q
    ||||| || |||||||||| |||||||||||||||||| ||||||||    
T  1441470 ataatcgactctacttgaaactaggatttgtagcttttgattctaga 1441424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 360
Target Start/End: Original strand, 38022330 - 38022424
Alignment:
Q  263 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgatttt 360  Q
    ||||||||||||||||||||| || |||||||| || |||||||||  ||||||| || || |  |||||||||| ||||   |||||||||||||||    
T  38022330 tgtatgtttggtttcacttctagaaggaccaaagtt-gattctagaagtgtagaattgattttggcatgtttgattgctc--aagtagaattgatttt 38022424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 8801990 - 8802043
Alignment:
Q  78 ttgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||||||||||  |||||||||||| ||||| || ||||| |||||||||    
T  8801990 ttgattctacttgaatttaggatttgtagtttttagttttagaaatgattttca 8802043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 35058359 - 35058412
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||||||| |||||| | ||  ||||||| |||||||||||||||||    
T  35058359 aattgattctacttggagctagaaattcgagcttttgattctagaattgatttt 35058412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 44771692 - 44771745
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||| | || |||| ||||||||||||| |||||| ||||||||||    
T  44771692 aattgattctacctaaatctagaatttgtagcttttgattctaaaattgatttt 44771745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 5406973 - 5407005
Alignment:
Q  137 ttcaactcacttttacatgaatgtatccaaaca 169  Q
    ||||| |||||||||||||||||||||||||||    
T  5406973 ttcaaatcacttttacatgaatgtatccaaaca 5407005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 32523422 - 32523374
Alignment:
Q  82 ttctacttg-aagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||| ||| ||||||||||||||||| |||||| ||||||||||    
T  32523422 ttctacttggaagttaggatttgtagcttttgattctaaaattgatttt 32523374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 40147866 - 40147834
Alignment:
Q  137 ttcaactcacttttacatgaatgtatccaaaca 169  Q
    |||||||||||||||||| ||||||||||||||    
T  40147866 ttcaactcacttttacattaatgtatccaaaca 40147834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 49634127 - 49634091
Alignment:
Q  76 aattgattcta-cttgaagctaggatttgtagctttt 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  49634127 aattgattctaacttgaagctaggatttgtagctttt 49634091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 54596819 - 54596871
Alignment:
Q  79 tgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    ||||| || |||||| ||| ||||||| ||||||||| |||||||||||||||    
T  54596819 tgattttatttgaagttagaatttgtaacttttaattttagaattgattttca 54596871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 30557505 - 30557605
Alignment:
Q  79 tgattctacttgaagctaggatttgtagcttttaattctagaattgattttca--------tacagttcaactcacttttacatgaatgtatccaaacac 170  Q
    |||||||| ||||||||||||||||||| |||| |||||||||||||||||||        || ||||||||||||||||| ||||||||||||||||||    
T  30557505 tgattctagttgaagctaggatttgtagtttttgattctagaattgattttcacacaaatttatagttcaactcacttttatatgaatgtatccaaacac 30557604  T
Q  171 a 171  Q
    |    
T  30557605 a 30557605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 1514341 - 1514446
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcataca----------gttcaactcacttttacatgaatgtatcca 165  Q
    |||| ||||||||||||||||||||||||||||||| ||| || |||||||||| | |||          |||||||||| |||||||||||||||||||    
T  1514341 aatttattctacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaactcatttttacatgaatgtatcca 1514440  T
Q  166 aacaca 171  Q
    ||||||    
T  1514441 aacaca 1514446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 3016158 - 3016263
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatc 163  Q
    |||||||||||||||||||  ||| ||||||||||||| |||||||||||||| || |          ||| ||||||||||||||||||||||||||||    
T  3016158 ataattgattctacttgaacttagaatttgtagcttttgattctagaattgatgtttacacataaatttacggttcaactcacttttacatgaatgtatc 3016257  T
Q  164 caaaca 169  Q
    ||||||    
T  3016258 caaaca 3016263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 11049252 - 11049301
Alignment:
Q  80 gattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  11049252 gattctacttgaagctaggatttgtagcttttgattctaaaattgatttt 11049301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 47321995 - 47321935
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcataca 135  Q
    |||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  47321995 ataattgattatacttgaagctagaatttgcag-ttttaattctagaattgattttcataca 47321935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 51500915 - 51500830
Alignment:
Q  82 ttctacttgaagctaggatttgtagcttttaattctagaattgattttcatacagttcaactcacttttacatgaatgtatccaaacacat 172  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||  ||||   ||||||| |||||||||||| ||||  |||||||    
T  51500915 ttctacttgaacctaggatttgtagcttttgattctagaattgatttt--taca---caactcaattttacatgaatttatcttaacacat 51500830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 28083976 - 28083870
Alignment:
Q  75 taattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcatac----------agttcaactcacttttacatgaatgtatcc 164  Q
    ||||||||||||||||||||||| ||||||||||||| |||||| |||| ||||| | ||          |||||| ||||||||||||||||| |||||    
T  28083976 taattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacacacaaatttcaagttcagctcacttttacatgaatatatcc 28083877  T
Q  165 aaacaca 171  Q
    |||||||    
T  28083876 aaacaca 28083870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 30850483 - 30850433
Alignment:
Q  79 tgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||||||||    
T  30850483 tgattctacttgaaactaggatttgtagtttttaattttagaattgatttt 30850433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 3515820 - 3515869
Alignment:
Q  80 gattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||||||| | ||||||||||| |||||||||||||||||    
T  3515820 gattctacttgaagctagaaattgtagcttttcattctagaattgatttt 3515869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 28287423 - 28287370
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||| ||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  28287423 aattggttctacttgaagcaaggatttgtagcttttgattttagaattgatttt 28287370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 48549099 - 48549046
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||||||||||| | ||||||||| | |||||||||||||||||    
T  48549099 aattgattctacttgaagctagaaattgtagcttctgattctagaattgatttt 48549046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 50571282 - 50571337
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||| |||| ||||    
T  50571282 aattgattctacttgaagttaggatttgtagttttttattctagaactgatgttca 50571337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 6021806 - 6021855
Alignment:
Q  80 gattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||||||||||||| |||||||||| |||||| ||| ||||||    
T  6021806 gattctacttgaagctaggatatgtagcttttgattctataatagatttt 6021855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 7524120 - 7524216
Alignment:
Q  85 tacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatccaaacaca 171  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||| |          || |||||||||||||||||||| ||||| ||||||||||    
T  7524120 tacttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcacttttacataaatgtgtccaaacaca 7524216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 8381964 - 8382017
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||||||||||| | ||||||| | || ||||||||||||||||    
T  8381964 aattgattctacttgaagctagaaattgtagcctctagttctagaattgatttt 8382017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 20026251 - 20026199
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattt 128  Q
    |||||||||||||||||||||| | ||  ||||||||| ||||||||||||||    
T  20026251 aattgattctacttgaagctagaaattcaagcttttaactctagaattgattt 20026199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 36780199 - 36780149
Alignment:
Q  81 attctacttgaagctaggattt-gtagcttttaattctagaattgattttc 130  Q
    ||||||||||||| |||||||| ||||||||| ||| ||||||||||||||    
T  36780199 attctacttgaagttaggattttgtagcttttgattatagaattgattttc 36780149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 40663061 - 40663015
Alignment:
Q  81 attctacttgaagctaggatttgtagcttttaattctagaattgatt 127  Q
    ||||||||| ||||||| ||||||||||||| |||| ||||||||||    
T  40663061 attctacttaaagctagtatttgtagcttttgattcaagaattgatt 40663015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 47892472 - 47892422
Alignment:
Q  79 tgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||| ||||||| | ||| ||||||| |||||||||||||||||    
T  47892472 tgattctacttaaagctagaaattgaagcttttgattctagaattgatttt 47892422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 213298 - 213265
Alignment:
Q  136 gttcaactcacttttacatgaatgtatccaaaca 169  Q
    |||||||||||||||||||| |||||||||||||    
T  213298 gttcaactcacttttacatgcatgtatccaaaca 213265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 7790729 - 7790676
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||||||| || ||||||||| |||  |||||| ||||||||||    
T  7790729 aattgattctacttgaagttatgatttgtagatttagattctataattgatttt 7790676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 10325025 - 10324972
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||| ||||||||||| ||| | ||||||||||| |||||| ||||||||||    
T  10325025 aattgagtctacttgaagatagaaattgtagcttttgattctataattgatttt 10324972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 24587838 - 24587899
Alignment:
Q  300 gattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttg 361  Q
    |||||||||| ||||||| || || | ||||||||| | |||||||||||||||||| ||||    
T  24587838 gattctagaggtgtagaattgattgtgacatgtttggttgctcttgagtagaattgactttg 24587899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 27849145 - 27849190
Alignment:
Q  84 ctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||||| ||| |||||||||| || ||||||||||||||    
T  27849145 ctacttgaagctacgatgtgtagcttttgatactagaattgatttt 27849190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 34387782 - 34387725
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||||| ||||||||| | ||| ||| ||||||| |||||| ||||||||||||    
T  34387782 ataattgattttacttgaagttgggaattgcagcttttgattctataattgattttca 34387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 37522997 - 37522944
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||||||||||| | ||| || |||| || ||||||||||||||    
T  37522997 aattgattctacttgaagctagaagttggagttttttatcctagaattgatttt 37522944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 213554 - 213522
Alignment:
Q  136 gttcaactcacttttacatgaatgtatccaaac 168  Q
    |||||||||||||||||||||||| ||||||||    
T  213554 gttcaactcacttttacatgaatgcatccaaac 213522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 1416237 - 1416205
Alignment:
Q  137 ttcaactcacttttacatgaatgtatccaaaca 169  Q
    |||||||||||||||||||||||||| ||||||    
T  1416237 ttcaactcacttttacatgaatgtattcaaaca 1416205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 31362279 - 31362239
Alignment:
Q  89 tgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  31362279 tgaagttagaatttgtagcttttgattctagaattgatttt 31362239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 33693020 - 33693072
Alignment:
Q  78 ttgattcta-cttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||| ||||||||||| | ||||||||||| |||||| ||||||||||    
T  33693020 ttgattctaacttgaagctagaaattgtagcttttgattctataattgatttt 33693072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 34915135 - 34915167
Alignment:
Q  137 ttcaactcacttttacatgaatgtatccaaaca 169  Q
    |||||||||||||||||||||||||| ||||||    
T  34915135 ttcaactcacttttacatgaatgtattcaaaca 34915167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 38797717 - 38797661
Alignment:
Q  75 taattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    ||||||||| ||||||||| || |||||||| ||| ||| || ||||||||||||||    
T  38797717 taattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttca 38797661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 40352493 - 40352553
Alignment:
Q  193 aaaatcaattctacaaaatcaattctaacaaatttaattctccacaccacactgccaaaca 253  Q
    ||||||||||| ||||||||||||||| |||| | |||||||| |||| |||  |||||||    
T  40352493 aaaatcaattccacaaaatcaattctatcaaaatcaattctcctcaccgcacaaccaaaca 40352553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 47053471 - 47053503
Alignment:
Q  135 agttcaactcacttttacatgaatgtatccaaa 167  Q
    |||| ||||||||||||||||||||||||||||    
T  47053471 agtttaactcacttttacatgaatgtatccaaa 47053503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 41386902 - 41386852
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41386902 aattgattctacttgaagctaggatttgtagcttttaattctagaattgat 41386852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 27571763 - 27571863
Alignment:
Q  271 tggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgcctcaagaa 370  Q
    ||||||||||||| ||||||||||| ||| |||| |||| ||||||| ||  ||  ||||||||||| ||||| ||||| |||||||||| |||||||||    
T  27571763 tggtttcacttctagagggaccaaatttg-attcaagaggtgtagaattgactcctacatgtttgattgctctcgagtataattgattttacctcaagaa 27571861  T
Q  371 tt 372  Q
    ||    
T  27571862 tt 27571863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 38123753 - 38123700
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||||||||||| | ||||||||| |||||||||||||||||||    
T  38123753 aattgattctacttgaagctagaaattgtagcttctaattctagaattgatttt 38123700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 17111836 - 17111896
Alignment:
Q  57 tttggttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattct 117  Q
    |||||||| | ||||| | ||||||||||||||||||||| |||||||||||||| |||||    
T  17111836 tttggttgctttcgagtagaattgattctacttgaagctatgatttgtagcttttgattct 17111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 28725138 - 28725088
Alignment:
Q  77 attgattctacttgaagctaggatttgtagcttttaattctagaattgatt 127  Q
    ||||||| ||||||||||||| ||||||||||||| |||||| ||||||||    
T  28725138 attgattatacttgaagctagaatttgtagcttttgattctataattgatt 28725088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 45557363 - 45557468
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcataca----------gttcaactcacttttacatgaatgtatcca 165  Q
    |||||||| | || |||||||| || |||||||||||||||||| ||||||||| | |||          | ||||||||||||||||||||||||||||    
T  45557363 aattgattttgctagaagctagaatctgtagcttttaattctaggattgatttttacacacaaatttgtagctcaactcacttttacatgaatgtatcca 45557462  T
Q  166 aacaca 171  Q
    ||||||    
T  45557463 aacaca 45557468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 27571860 - 27571913
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||||||| ||| | ||| ||||||| |||||||||||||||||    
T  27571860 aattgattctacttgaagttagaaattggagcttttgattctagaattgatttt 27571913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 30182383 - 30182330
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||||||||||  | ||||||||||| ||||||||||| |||||    
T  30182383 aattgattctacttgaagctaaaaattgtagcttttgattctagaattaatttt 30182330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 40561775 - 40561742
Alignment:
Q  136 gttcaactcacttttacatgaatgtatccaaaca 169  Q
    ||||||||||||||||||||||||||||||||||    
T  40561775 gttcaactcacttttacatgaatgtatccaaaca 40561742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 22195862 - 22195917
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||| ||||| |||||| |||||||| ||||| |||||| ||||||||||||    
T  22195862 aattgattttactttaagctatgatttgtaacttttgattctaaaattgattttca 22195917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 29842087 - 29842138
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatt 127  Q
    |||||||||||||| |||  |||||| || ||||||||||||||||||||||    
T  29842087 aattgattctacttaaagagaggattcgtggcttttaattctagaattgatt 29842138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 12306933 - 12306971
Alignment:
Q  327 acatgtttgatggctcttgagtagaattgattttgcctc 365  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  12306933 acatgtttggttgctcttgagtagaattgattttgcctc 12306971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 26984567 - 26984533
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttt 110  Q
    ||||||||||||||||||||| |||||||||||||    
T  26984567 aattgattctacttgaagctaagatttgtagcttt 26984533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 40491576 - 40491677
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 165  Q
    |||||| ||||||||||| || | |||||||||||| ||||||||||||| ||| |          || |||| ||||||||||||||||||||||||||    
T  40491576 aattgactctacttgaagttaagttttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcacttttacatgaatgtatcca 40491675  T
Q  166 aa 167  Q
    ||    
T  40491676 aa 40491677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 38123836 - 38123769
Alignment:
Q  267 tgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttg 335  Q
    ||||||||| ||||| ||||||  ||||||||| ||||||||||||||||| || || | |||||||||    
T  38123836 tgtttggttccacttttggaggagccaaaattg-attctagagatgtagaattgattttaacatgtttg 38123769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 6896056 - 6895983
Alignment:
Q  57 tttggttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttc 130  Q
    |||||||||||||||| | |||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||    
T  6896056 tttggttgttgtcgagtacaattgattctacctgaagttaggatttgtagcttttgattctagaatttattttc 6895983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 4910906 - 4911009
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 165  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||          || ||||| |||||||||||||| ||||||||||    
T  4910906 aattgattctacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttatagttcgactcacttttacataaatgtatcca 4911005  T
Q  166 aaca 169  Q
    ||||    
T  4911006 aaca 4911009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 6654177 - 6654117
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcatacag 136  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  6654177 aattaattctacttgaagctaggatttgtagcttttaattctagatttgattttcacacag 6654117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 765473 - 765422
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatt 127  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  765473 aattgattctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 16540105 - 16540210
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 165  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||||||| |||||          || |||| ||||||||||||||| ||||||||||    
T  16540105 aattgattctacttgaagctaggatttgtagcttttgattattgaattgagtttcacttacatatttatagttaaactcacttttacatcaatgtatcca 16540204  T
Q  166 aacaca 171  Q
    ||||||    
T  16540205 aacaca 16540210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 5724717 - 5724664
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  5724717 aattgattctacttgaagctaggatttgtaactttttattctataattgatttt 5724664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 25195451 - 25195348
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 165  Q
    |||||||||||||||||||  |||||||||| |||| |||||| ||||||||||||          |||| |||||||||||||||||| ||||||||||    
T  25195451 aattgattctacttgaagc--ggatttgtagtttttcattctataattgattttcatacacaaatttacaattcaactcacttttacataaatgtatcca 25195354  T
Q  166 aacaca 171  Q
    ||||||    
T  25195353 aacaca 25195348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 364
Target Start/End: Complemental strand, 1485339 - 1485238
Alignment:
Q  263 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctc-acatgtttgatggctcttgagtagaattgattttg 361  Q
    ||||| ||||||||||||||| |||||  ||| || ||||||||||| ||||||| || ||||  ||||||||| | |||||||||||||||| ||||||    
T  1485339 tgtatatttggtttcacttctagaggggtcaatat-ggattctagaggtgtagaattgattcttgacatgtttgtttgctcttgagtagaattaattttg 1485241  T
Q  362 cct 364  Q
    |||    
T  1485240 cct 1485238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 31725758 - 31725828
Alignment:
Q  60 ggttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttc 130  Q
    ||||||||||||| | ||||||||||||||||| ||||||||| ||  |||| |||||| |||||||||||    
T  31725758 ggttgttgtcgagtagaattgattctacttgaacctaggatttttaatttttgattctaaaattgattttc 31725828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 7952796 - 7952748
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattg 124  Q
    |||| |||||||||||||| |||||||||||||||| ||||||||||||    
T  7952796 aatttattctacttgaagcgaggatttgtagcttttgattctagaattg 7952748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 3482044 - 3482149
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 165  Q
    |||||||| ||||||||| || |||||||||| ||| ||| |||||||||||||||          || ||||||||| |||||||||||||||||| ||    
T  3482044 aattgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaacttacttttacatgaatgtattca 3482143  T
Q  166 aacaca 171  Q
    ||||||    
T  3482144 aacaca 3482149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 1485233 - 1485180
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||||||||| |||| | ||| ||||||| |||||||||||||||||    
T  1485233 aattgattctacttgaatctagaaattggagcttttgattctagaattgatttt 1485180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 30927041 - 30927094
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||| |||||||||||| |||| ||||||||| ||| |||||||||||||    
T  30927041 aattgattatacttgaagctaagattcgtagcttttgattatagaattgatttt 30927094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 852528 - 852583
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||| |||||||||||| | |||||| || | |||||||||||||||||    
T  852528 ataattgattcaacttgaagctagaaattgtaggttctgattctagaattgatttt 852583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 28052947 - 28053002
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||| ||||||||| ||| |||||||| | ||||||||| ||||||||||||    
T  28052947 aattgattatacttgaagatagaatttgtagttattaattctaaaattgattttca 28053002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 365
Target Start/End: Complemental strand, 5724822 - 5724721
Alignment:
Q  263 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgc 362  Q
    ||||||||||||| ||||||| ||||| ||||||||  ||||||||  ||||||| || |||| |||||||||   ||| |   ||||||||||||||||    
T  5724822 tgtatgtttggttccacttctagaggggccaaaatt-aattctagaagtgtagaattgattctgacatgtttggatgctttcaggtagaattgattttgc 5724724  T
Q  363 ctc 365  Q
    |||    
T  5724723 ctc 5724721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 8856376 - 8856410
Alignment:
Q  137 ttcaactcacttttacatgaatgtatccaaacaca 171  Q
    ||||||||||||| |||||||||||||||||||||    
T  8856376 ttcaactcactttcacatgaatgtatccaaacaca 8856410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 579191 - 579126
Alignment:
Q  300 gattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgcctc 365  Q
    ||||||||||||||| ||||| || | ||||| ||||| ||||| |||||||| ||| ||||||||    
T  579191 gattctagagatgtaaaactgattttgacatgattgattgctctcgagtagaactgactttgcctc 579126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 25195848 - 25195897
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattga 125  Q
    ||||||||||| || || ||||||||| |||||||| |||||||||||||    
T  25195848 aattgattctaattaaaactaggatttatagcttttgattctagaattga 25195897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 26280603 - 26280656
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||| |||||||||||| |||||||| |||| |||| | ||||||||||    
T  26280603 aattgattccacttgaagctagaatttgtagtttttgattccaaaattgatttt 26280656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 2234341 - 2234305
Alignment:
Q  329 atgtttgatggctcttgagtagaattgattttgcctc 365  Q
    ||||||| | |||||||||||||||||||||||||||    
T  2234341 atgtttggttgctcttgagtagaattgattttgcctc 2234305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 16540241 - 16540289
Alignment:
Q  193 aaaatcaattctacaaaatcaattctaacaaatttaattctccacacca 241  Q
    ||||||||||||||| ||||||||||| |||| | |||||||| |||||    
T  16540241 aaaatcaattctacataatcaattctatcaaaatcaattctccccacca 16540289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 34620955 - 34620987
Alignment:
Q  137 ttcaactcacttttacatgaatgtatccaaaca 169  Q
    |||||||||||||||||| ||||||||||||||    
T  34620955 ttcaactcacttttacataaatgtatccaaaca 34620987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 34748392 - 34748424
Alignment:
Q  137 ttcaactcacttttacatgaatgtatccaaaca 169  Q
    |||||||||||||||||| ||||||||||||||    
T  34748392 ttcaactcacttttacataaatgtatccaaaca 34748424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 16551959 - 16552053
Alignment:
Q  80 gattctacttgaagctaggatttgtagcttttaattctagaattgattttca--------tacagttcaactcacttttacatgaatgtatccaa 166  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||||||        || ||||||||||||||||||||||||||||||||    
T  16551959 gattctccttgaagctaggatttgtagtttttagttctagaattgattttcacacaaatttatagttcaactcacttttacatgaatgtatccaa 16552053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 32818457 - 32818350
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt--ca--------tacagttcaactcacttttacatgaatgtatcca 165  Q
    ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||  ||        || ||||||||| |||||||||||||||||||||    
T  32818457 aattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaactaacttttacatgaatgtatcca 32818358  T
Q  166 aacacata 173  Q
    ||||||||    
T  32818357 aacacata 32818350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 372
Target Start/End: Original strand, 2635056 - 2635164
Alignment:
Q  263 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgc 362  Q
    ||||||||||||||||||| | |||||||||||||| |||||||||  |||| || || || | ||||||||||| ||| || ||||||| |||||||||    
T  2635056 tgtatgtttggtttcacttttagagggaccaaaatt-gattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactgattttgc 2635154  T
Q  363 ctcaagaatt 372  Q
    ||| ||||||    
T  2635155 ctccagaatt 2635164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 8604710 - 8604654
Alignment:
Q  75 taattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  8604710 taattgattctacttgaagctaagatttgtagctttcgattctagaattgattttca 8604654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 55187049 - 55186994
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||    
T  55187049 aattgattctacttgaagttaggatttgtaacttttaattatagaattgattttca 55186994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 9064227 - 9064284
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    ||||||||||||||||||| |||| |||||||| |||| |||||||||||||||||||    
T  9064227 ataattgattctacttgaaactagaatttgtagtttttgattctagaattgattttca 9064284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 50061715 - 50061660
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||||||||||||| |||||||||||| |||| |||||||| ||||||||||    
T  50061715 aattgattctacttgaagttaggatttgtagtttttgattctagagttgattttca 50061660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 49138845 - 49138791
Alignment:
Q  81 attctacttgaagctaggatttgtagcttttaattctagaattgattttcataca 135  Q
    ||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||    
T  49138845 attctacttgaagctaggatttgtaacttttgattctaaaattgatttttataca 49138791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 1616371 - 1616439
Alignment:
Q  58 ttggttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattctagaattgatt 127  Q
    ||||||||| ||||| | |||||||||||||| ||||||  ||||||||||||| |||||||||||||||    
T  1616371 ttggttgttatcgagtagaattgattctactt-aagctacaatttgtagcttttgattctagaattgatt 1616439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 9134608 - 9134663
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    ||||||| |||||||||||||  ||||||||||||| ||| |||||||||||||||    
T  9134608 aattgatcctacttgaagctaaaatttgtagcttttgattttagaattgattttca 9134663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 35065059 - 35065114
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||| ||||||||||||| ||||||  ||||| |||||||||||||||||    
T  35065059 ataattgattttacttgaagctagtatttgtgacttttgattctagaattgatttt 35065114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 21691299 - 21691194
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 165  Q
    ||||||||| ||||||| ||| ||||||||||||||  || |||||||||||||||          || |||||||| ||||||||||||||| ||||||    
T  21691299 aattgattcaacttgaaactaagatttgtagcttttggttgtagaattgattttcacacacaaatttatagttcaacacacttttacatgaatatatcca 21691200  T
Q  166 aacaca 171  Q
    ||||||    
T  21691199 aacaca 21691194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 33843584 - 33843637
Alignment:
Q  263 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaa 317  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||||| |||||||    
T  33843584 tgtatgtttggtttcacttctagagggtccaaaatt-gattctagaggtgtagaa 33843637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 53713648 - 53713543
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 165  Q
    |||| ||| |||||||||||| |||||||||||||| |||||| |||||| || ||          || |||||||||||||||||||||||||| ||||    
T  53713648 aattaattttacttgaagctacgatttgtagcttttgattctataattgacttccacataaatatatatagttcaactcacttttacatgaatgtgtcca 53713549  T
Q  166 aacaca 171  Q
    ||||||    
T  53713548 aacaca 53713543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 14596687 - 14596740
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||||||||||||| | |||| || |||| |||||||||||||||||    
T  14596687 aattgattctacttgaagctatgttttgcagtttttgattctagaattgatttt 14596740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 30357510 - 30357563
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||||||||||||  |||||||||||||| ||| || ||||||||||    
T  30357510 aattgattctacttgaagctgtgatttgtagcttttgattatataattgatttt 30357563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 31012826 - 31012773
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||  || ||||||||||||| |||||||| |||||||||||||    
T  31012826 aattgattctactcaaaactaggatttgtagtttttaattttagaattgatttt 31012773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 29779141 - 29779106
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagctttt 111  Q
    |||||||||||||||||||||| |||||||||||||    
T  29779141 aattgattctacttgaagctagaatttgtagctttt 29779106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 337
Target Start/End: Original strand, 29904120 - 29904198
Alignment:
Q  258 cttaatgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgat 337  Q
    |||| ||||||||||||||||||||| ||||  ||| |||| |||||||||||| || || || |||| |||||||||||    
T  29904120 cttagtgtatgtttggtttcacttctagaggatccacaatt-gattctagagatataaaattgattctaacatgtttgat 29904198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 41370095 - 41370044
Alignment:
Q  78 ttgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||||| |||||||| ||| |||| |||||||| ||||||||    
T  41370095 ttgattctacttgaagttaggatttatagttttttattctagacttgatttt 41370044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 45011884 - 45011927
Alignment:
Q  88 ttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    ||||| || ||||||||||||||| |||||||||||||||||||    
T  45011884 ttgaaactgggatttgtagcttttgattctagaattgattttca 45011927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 1048716 - 1048766
Alignment:
Q  77 attgattctacttgaagctaggatttgtagcttttaattctagaattgatt 127  Q
    ||||||||||||| ||| ||| |||| ||||||||||||||| ||||||||    
T  1048716 attgattctacttaaagttagaatttatagcttttaattctataattgatt 1048766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 26617469 - 26617519
Alignment:
Q  79 tgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||||||||||| || |||||||||| ||| || ||||||||||    
T  26617469 tgattctacttgaagctagaatctgtagcttttgattataaaattgatttt 26617519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 32817540 - 32817486
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagc-ttttaattctagaattgatttt 129  Q
    |||||||||||||||| ||||| ||||||||| ||||| ||||| ||||||||||    
T  32817540 aattgattctacttgaggctagaatttgtagctttttacttctacaattgatttt 32817486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 35065136 - 35065166
Alignment:
Q  141 actcacttttacatgaatgtatccaaacaca 171  Q
    |||||||||||||||||||||||||||||||    
T  35065136 actcacttttacatgaatgtatccaaacaca 35065166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 33560700 - 33560655
Alignment:
Q  327 acatgtttgatggctcttgagtagaattgattttgcctcaagaatt 372  Q
    ||||||||| | ||||| ||||||||||||||||||||| ||||||    
T  33560700 acatgtttggttgctctcgagtagaattgattttgcctctagaatt 33560655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 37439143 - 37439196
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||| ||| ||||||||||||| | || ||||||||||||||| ||||||||||    
T  37439143 aatttattatacttgaagctagaaattatagcttttaattctataattgatttt 37439196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 43571476 - 43571529
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||| ||||||||||||  |||| || |||||||||||||| ||||||||    
T  43571476 aattgattatacttgaagctataatttttaacttttaattctagagttgatttt 43571529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 55927787 - 55927754
Alignment:
Q  136 gttcaactcacttttacatgaatgtatccaaaca 169  Q
    |||||| |||||||||||||||||||||||||||    
T  55927787 gttcaagtcacttttacatgaatgtatccaaaca 55927754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 1616457 - 1616493
Alignment:
Q  135 agttcaactcacttttacatgaatgtatccaaacaca 171  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  1616457 agttcaactcatttttacatgaatgtattcaaacaca 1616493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 1616523 - 1616563
Alignment:
Q  193 aaaatcaattctacaaaatcaattctaacaaatttaattct 233  Q
    ||||||||||||||||||||||||||| |||| | ||||||    
T  1616523 aaaatcaattctacaaaatcaattctatcaaaatcaattct 1616563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 5025588 - 5025616
Alignment:
Q  189 aactaaaatcaattctacaaaatcaattc 217  Q
    |||||||||||||||||||||||||||||    
T  5025588 aactaaaatcaattctacaaaatcaattc 5025616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 11271625 - 11271589
Alignment:
Q  76 aattgattcta-cttgaagctaggatttgtagctttt 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  11271625 aattgattctaacttgaagctaggatttgtagctttt 11271589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 16643981 - 16644029
Alignment:
Q  81 attctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||||||||  |||| ||| |||| |||||||||||||||||    
T  16643981 attctacttgaagctataatttatagattttgattctagaattgatttt 16644029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 45694681 - 45694717
Alignment:
Q  135 agttcaactcacttttacatgaatgtatccaaacaca 171  Q
    |||| |||||| |||||||||||||||||||||||||    
T  45694681 agttgaactcatttttacatgaatgtatccaaacaca 45694717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 335
Target Start/End: Complemental strand, 49139027 - 49138956
Alignment:
Q  263 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttg 335  Q
    ||||||||||||| |||||||  || | |||||||| |||||||||| ||||||| || |||| |||||||||    
T  49139027 tgtatgtttggttccacttctaaagtggccaaaatt-gattctagaggtgtagaattgattctgacatgtttg 49138956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 52342023 - 52342059
Alignment:
Q  135 agttcaactcacttttacatgaatgtatccaaacaca 171  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  52342023 agttcaactcatttttacatgaatgtattcaaacaca 52342059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 32927892 - 32927995
Alignment:
Q  78 ttgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatccaaa 167  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||| ||||| |          || |||||||||||||||||||||||||||||||||    
T  32927892 ttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaa 32927991  T
Q  168 caca 171  Q
    ||||    
T  32927992 caca 32927995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 4662990 - 4662937
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||| |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  4662990 aatttattctacttgaagctaggatttgtagcttttgtttctagaattgatttt 4662937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 15677903 - 15677850
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  15677903 aattgattctacttgaagctaggatttatagcttttgattatagaattgatttt 15677850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 35494990 - 35495093
Alignment:
Q  78 ttgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatccaaa 167  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||| |||| |          || ||||||||| |||||||||||||| ||||||||    
T  35494990 ttgattctacatgaagctaggatttgtagcttttgattctagaattgttttttacacacaaatctatagttcaacttacttttacatgaatatatccaaa 35495089  T
Q  168 caca 171  Q
    ||||    
T  35495090 caca 35495093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 13384741 - 13384686
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    ||||||||||| |||||||||  ||||||||||||| |||||||||||||||||||    
T  13384741 aattgattctatttgaagctaaaatttgtagcttttgattctagaattgattttca 13384686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 32994329 - 32994270
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcataca 135  Q
    ||||||||||||||||||||| ||||| |||||||| | ||||||||||||||| |||||    
T  32994329 aattgattctacttgaagctatgatttctagcttttgagtctagaattgatttttataca 32994270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 38868496 - 38868551
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    ||||||||||||||||||||| ||||||||||||||  ||||| ||||||||||||    
T  38868496 aattgattctacttgaagctaagatttgtagcttttggttctataattgattttca 38868551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 44141137 - 44141082
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||||||||||||| |||||||||||| |||| |||||||| ||||||||||    
T  44141137 aattgattctacttgaagttaggatttgtagtttttgattctagagttgattttca 44141082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 26100233 - 26100128
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcataca----------gttcaactcacttttacatgaatgtatcca 165  Q
    ||||| ||||| |||||||||||||||||||||||| |||||| |||||||||| | |||          ||||||||||||||||||| |||| |||||    
T  26100233 aattggttctatttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttacataaatgcatcca 26100134  T
Q  166 aacaca 171  Q
    ||||||    
T  26100133 aacaca 26100128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 37684403 - 37684508
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 165  Q
    |||||||||||||||||| |||||||||| |||||| |||||| |||||||||| |          || | |||||||||||||||||| ||||||||||    
T  37684403 aattgattctacttgaagttaggatttgtggcttttgattctaaaattgattttaatgcaaaaatttataattcaactcacttttacataaatgtatcca 37684502  T
Q  166 aacaca 171  Q
    ||||||    
T  37684503 aacaca 37684508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 38335967 - 38335895
Alignment:
Q  57 tttggttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||| ||||| ||||| ||||||||||| | ||||||||| ||||||| |||||| ||| |||||||||||||    
T  38335967 tttgtttgttttcgagtataattgattccagttgaagctaagatttgttgcttttgattttagaattgatttt 38335895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 7244688 - 7244633
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    ||||||||||||||||| ||| ||| ||||| |||| |||||||||||||||||||    
T  7244688 aattgattctacttgaaactaagatatgtagtttttgattctagaattgattttca 7244633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 10367993 - 10368046
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||| |||||||||| ||||||||||| ||||||| ||||||||||| |||||    
T  10367993 aattggttctacttgaggctaggatttgcagcttttgattctagaattcatttt 10368046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 16972149 - 16972046
Alignment:
Q  78 ttgattctacttgaagctaggatttgtagcttttaattctagaattgattttcataca----------gttcaactcacttttacatgaatgtatccaaa 167  Q
    |||||| || |||||||||| |||||||| |||||||| ||||||||||||| | |||          |||||| |||||||||||||||||||| ||||    
T  16972149 ttgattgtatttgaagctagaatttgtagtttttaattttagaattgatttttaaacacaaatttattgttcaaatcacttttacatgaatgtattcaaa 16972050  T
Q  168 caca 171  Q
    ||||    
T  16972049 caca 16972046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 18355970 - 18355882
Alignment:
Q  42 aattgattttgccattt-tggttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||| ||| | || ||||| ||||| | ||||||||||  |||||||||||||||||  ||||| |||||| ||||||||||    
T  18355970 aattgattttgacatgtatgattgttttcgagtagaattgattctgattgaagctaggatttgtgtcttttgattctaaaattgatttt 18355882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 6027138 - 6027079
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcata 133  Q
    ||||||||||||||||| || ||   | |||||||||| |||||||||||||||||||||    
T  6027138 ataattgattctacttgtagttaaagtatgtagcttttgattctagaattgattttcata 6027079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 10378283 - 10378232
Alignment:
Q  78 ttgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||| || ||| ||||||||| |||||||| |||||||||||||    
T  10378283 ttgattctacttaaaactatgatttgtaggttttaattttagaattgatttt 10378232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 11572547 - 11572488
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcata 133  Q
    |||||||||| ||||||||||||  |||||||| |||| ||| || ||||||||||||||    
T  11572547 ataattgattatacttgaagctaaaatttgtagattttgattataaaattgattttcata 11572488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 36200219 - 36200164
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    ||||||||| |||||||| || ||||||| | |||| |||||||||||||||||||    
T  36200219 aattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttca 36200164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 7644562 - 7644596
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttt 110  Q
    |||||||||||||| ||||||||||||||||||||    
T  7644562 aattgattctacttaaagctaggatttgtagcttt 7644596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 9461554 - 9461520
Alignment:
Q  137 ttcaactcacttttacatgaatgtatccaaacaca 171  Q
    ||||||||||||||| |||||||||||||||||||    
T  9461554 ttcaactcacttttatatgaatgtatccaaacaca 9461520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 41891846 - 41891804
Alignment:
Q  189 aactaaaatcaattctacaaaatcaattctaacaaatttaatt 231  Q
    ||||||||||||||||||||||||||||| | |||| ||||||    
T  41891846 aactaaaatcaattctacaaaatcaattcaatcaaaattaatt 41891804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 43492255 - 43492221
Alignment:
Q  135 agttcaactcacttttacatgaatgtatccaaaca 169  Q
    ||||||||| |||||||||||||||||||||||||    
T  43492255 agttcaacttacttttacatgaatgtatccaaaca 43492221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 30098908 - 30098961
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||| || |||||||||| ||||||||||||  ||||||||||| |||||    
T  30098908 aattgattttatttgaagctagaatttgtagctttcgattctagaattaatttt 30098961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 32101140 - 32101176
Alignment:
Q  135 agttcaactcacttttacatgaatgtatccaaacaca 171  Q
    |||||||||||||||||||| |||||||||| |||||    
T  32101140 agttcaactcacttttacataaatgtatccacacaca 32101176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 9818730 - 9818785
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  9818730 ataattgattctacttgaagctatgatttgtagcttttgattctagaattgatttt 9818785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 18851171 - 18851114
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  18851171 ataattgattctacttgaagctatgatttgtagcttttgattatagaattgattttca 18851114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 38845441 - 38845496
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||    
T  38845441 aattgattctacttgaagctaagatttgtagtttttgattctagaattgattttca 38845496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 6951394 - 6951340
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattt 128  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||    
T  6951394 ataattgattctacttgaagttaggatttgtagcttttgattctataattgattt 6951340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 42858106 - 42858211
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 165  Q
    |||||||| ||||||||| ||||||||| |||||||||||||| ||||||||||||          || |||||||||||||||||||||||| ||| ||    
T  42858106 aattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaactcacttttacatgaatttattca 42858205  T
Q  166 aacaca 171  Q
    ||||||    
T  42858206 aacaca 42858211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 14299328 - 14299383
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||    
T  14299328 aattgattctacttgaagttaggatttgtagttttttattctagaattggttttca 14299383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 2090222 - 2090182
Alignment:
Q  259 ttaatgtatgtttggtttcacttctggagggaccaaaattg 299  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  2090222 ttaatgtttgtttggtttcacttctggagggaccaaaattg 2090182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 39097244 - 39097299
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||||||||||||||||  ||||||| ||||||||| || ||||||||||||    
T  39097244 aattgattctacttgaagctaaaatttgtaacttttaattatataattgattttca 39097299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 8121547 - 8121633
Alignment:
Q  81 attctacttgaagctaggatttgtagcttttaattctagaattgattttcatacagttcaactcacttttacatgaatgtatccaaa 167  Q
    ||||||||| ||| ||| | ||||||||| | |||||||| ||||||||    | |||||| |||||||||||||||||||||||||    
T  8121547 attctacttaaagttagaaattgtagcttctgattctagagttgatttttcacctgttcaattcacttttacatgaatgtatccaaa 8121633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 18637282 - 18637335
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||| ||||||||||| |||  ||||||||| |||||||||||||||||    
T  18637282 aattgattccacttgaagctaagataagtagcttttgattctagaattgatttt 18637335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 11648080 - 11648135
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    ||||||||||||||||||||| ||||||||  |||| ||| || ||||||||||||    
T  11648080 aattgattctacttgaagctaagatttgtacattttgattataaaattgattttca 11648135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 34250438 - 34250383
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||||||||||| ||||| | ||||||||||| |||||| ||||| ||||||    
T  34250438 aattgattctacttgatgctagaaattgtagcttttgattctacaattgtttttca 34250383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 372
Target Start/End: Original strand, 10898626 - 10898723
Alignment:
Q  274 tttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgcctcaagaatt 372  Q
    |||||||| |||||| | |||||||| ||||||||| ||| ||| |  || | ||||||||| | ||||| ||||| ||||||||||||||| ||||||    
T  10898626 tttcacttttggaggaatcaaaattg-attctagagctgtcgaattaattttgacatgtttggttgctctcgagtaaaattgattttgcctctagaatt 10898723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 11577637 - 11577603
Alignment:
Q  137 ttcaactcacttttacatgaatgtatccaaacaca 171  Q
    ||||||||||||||||||||||| |||||||||||    
T  11577637 ttcaactcacttttacatgaatgcatccaaacaca 11577603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 22226322 - 22226276
Alignment:
Q  77 attgattctacttgaagctaggatttgtagcttttaattctagaatt 123  Q
    ||||||||||||||||| ||| ||||||||||||| ||| |||||||    
T  22226322 attgattctacttgaagatagtatttgtagcttttgattttagaatt 22226276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 22572491 - 22572442
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattga 125  Q
    |||||||| | ||||||||| ||||||||||||||| ||| |||||||||    
T  22572491 aattgattgttcttgaagctgggatttgtagcttttgattatagaattga 22572442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 29922582 - 29922627
Alignment:
Q  327 acatgtttgatggctcttgagtagaattgattttgcctcaagaatt 372  Q
    ||||||||||| | |||  |||||||||||||||||||||||||||    
T  29922582 acatgtttgattgttctctagtagaattgattttgcctcaagaatt 29922627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 36639939 - 36639988
Alignment:
Q  80 gattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||||| | | ||||||||| |||||||||||||| ||||    
T  36639939 gattctacttgaagctggaaattgtagcttctaattctagaattgttttt 36639988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 22572593 - 22572557
Alignment:
Q  263 tgtatgtttggtttcacttctggagggaccaaaattg 299  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  22572593 tgtatgtttggtttcacttctagagggacaaaaattg 22572557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 31906255 - 31906307
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgat 126  Q
    |||||||||| |||||||||||| |||||||| ||||| ||| || |||||||    
T  31906255 ataattgattttacttgaagctatgatttgtaacttttgattatataattgat 31906307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 34250507 - 34250435
Alignment:
Q  300 gattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgcctcaagaatt 372  Q
    |||||||||  ||||||| ||||| | ||||||||| |  |||| |||||||||||||| |||||| ||||||    
T  34250507 gattctagatgtgtagaattgtttttgacatgtttggtttctctagagtagaattgattatgcctctagaatt 34250435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 38845705 - 38845650
Alignment:
Q  261 aatgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaa 317  Q
    ||||||||||||||| ||||||| ||| |||||||||| |||||| ||| |||||||    
T  38845705 aatgtatgtttggttccacttctagagagaccaaaatt-gattctggaggtgtagaa 38845650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 42740973 - 42741028
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  42740973 ataattgattctacttgaagctaagatttgtagcttttgattctagaattgatttt 42741028  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 358
Target Start/End: Complemental strand, 33047742 - 33047650
Alignment:
Q  265 tatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgatt 358  Q
    ||||||||||||| ||||| |||||||||||||| |||| | ||| ||||||| || |||||||||||||||| |||   ||||||||||||||    
T  33047742 tatgtttggtttcgcttctagagggaccaaaatt-gattttggaggtgtagaattgattctcacatgtttgattgctgacgagtagaattgatt 33047650  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 43501123 - 43501174
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatt 127  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||||||||    
T  43501123 aattgattctacttgaaactaggatttgtagcttttgattttagaattgatt 43501174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 2002779 - 2002729
Alignment:
Q  79 tgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||||||    
T  2002779 tgattctacttgaagctaggatttgtagtttttcattctaaaattgatttt 2002729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 33019243 - 33019138
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcataca----------gttcaactcacttttacatgaatgtatcca 165  Q
    |||||||| || |||||||||| |||||||||||||  || ||||||||||||||| |||          |||||||||||||||||||||||| |||||    
T  33019243 aattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatagttcaactcacttttacatgaatgcatcca 33019144  T
Q  166 aacaca 171  Q
    ||||||    
T  33019143 aacaca 33019138  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 30503207 - 30503260
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||||||||||| |||||| ||||||||| |||| ||||||||||||    
T  30503207 aattgattctacttgaagccaggattcgtagcttttgattcaagaattgatttt 30503260  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 16518845 - 16518881
Alignment:
Q  135 agttcaactcacttttacatgaatgtatccaaacaca 171  Q
    |||||||||||||||||||||||||||||||||||||    
T  16518845 agttcaactcacttttacatgaatgtatccaaacaca 16518881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 42982544 - 42982595
Alignment:
Q  78 ttgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    |||||||||||||||||||| | ||||||||||| |||| ||||||||||||    
T  42982544 ttgattctacttgaagctagaaattgtagcttttgattccagaattgatttt 42982595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 12037059 - 12037116
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcata 133  Q
    ||||||||||| ||||| |||  ||||||||||||| |||||| ||||||||||||||    
T  12037059 aattgattctagttgaaactaaaatttgtagcttttgattctacaattgattttcata 12037116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 13912770 - 13912890
Alignment:
Q  61 gttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcactttt 150  Q
    |||||||||||| | |||| ||||||| ||||||||| |||||||  |||| ||||||||||| ||||| |          ||| |||||||||| ||||    
T  13912770 gttgttgtcgagtagaatttattctacatgaagctagaatttgtaattttttattctagaattaatttttacacacaaatttaccgttcaactcattttt 13912869  T
Q  151 acatgaatgtatccaaacaca 171  Q
    |||||| ||||||||||||||    
T  13912870 acatgattgtatccaaacaca 13912890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 12850727 - 12850778
Alignment:
Q  193 aaaatcaattctacaaaatcaattctaacaaatttaattctccacaccacac 244  Q
    ||||||||||||||| |||||||||||  ||| | |||||||||||||||||    
T  12850727 aaaatcaattctacataatcaattctattaaaatcaattctccacaccacac 12850778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 21234612 - 21234577
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagctttt 111  Q
    |||||||||||||||||||||| |||||||||||||    
T  21234612 aattgattctacttgaagctagaatttgtagctttt 21234577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 680306 - 680272
Alignment:
Q  137 ttcaactcacttttacatgaatgtatccaaacaca 171  Q
    |||||||||||||||||||||||||| ||||||||    
T  680306 ttcaactcacttttacatgaatgtatgcaaacaca 680272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 22536146 - 22536200
Alignment:
Q  204 tacaaaatcaattctaacaaatttaattctccacaccacactgccaaacatacgc 258  Q
    |||| ||||||||||| |||| | |||||||||||||||||  ||||||||||||    
T  22536146 tacataatcaattctatcaaaatcaattctccacaccacacacccaaacatacgc 22536200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 169
Target Start/End: Complemental strand, 1976877 - 1976848
Alignment:
Q  140 aactcacttttacatgaatgtatccaaaca 169  Q
    ||||||||||||||||||||||||||||||    
T  1976877 aactcacttttacatgaatgtatccaaaca 1976848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 3352072 - 3352129
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||||| ||||||||| | ||| ||| ||||||| |||||| ||||||||||||    
T  3352072 ataattgattttacttgaagttgggaattgcagcttttgattctataattgattttca 3352129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 15220878 - 15220845
Alignment:
Q  136 gttcaactcacttttacatgaatgtatccaaaca 169  Q
    |||||||||||||| |||||||||||||||||||    
T  15220878 gttcaactcactttaacatgaatgtatccaaaca 15220845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 31453379 - 31453436
Alignment:
Q  74 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||||||||||||||||||  ||||||  ||||| |||||  ||||||||||||    
T  31453379 ataattgattctacttgaagctaaaatttgttccttttgattctgaaattgattttca 31453436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 40401660 - 40401627
Alignment:
Q  136 gttcaactcacttttacatgaatgtatccaaaca 169  Q
    |||||||| |||||||||||||||||||||||||    
T  40401660 gttcaactgacttttacatgaatgtatccaaaca 40401627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 43717322 - 43717355
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagctt 109  Q
    |||||||||||||||||||||| |||||||||||    
T  43717322 aattgattctacttgaagctagaatttgtagctt 43717355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 8800714 - 8800682
Alignment:
Q  137 ttcaactcacttttacatgaatgtatccaaaca 169  Q
    ||||||||||||||||||||| |||||||||||    
T  8800714 ttcaactcacttttacatgaacgtatccaaaca 8800682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 9143044 - 9143092
Alignment:
Q  137 ttcaactcacttttacatgaatgtatccaaacacataccctttttagtc 185  Q
    |||||||||| ||||||||||||||| |||||| | ||| |||||||||    
T  9143044 ttcaactcacatttacatgaatgtattcaaacaaaaaccatttttagtc 9143092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 11504080 - 11504044
Alignment:
Q  135 agttcaactcacttttacatgaatgtatccaaacaca 171  Q
    ||||||||||||||||||||||||||||  |||||||    
T  11504080 agttcaactcacttttacatgaatgtattaaaacaca 11504044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 42982615 - 42982643
Alignment:
Q  139 caactcacttttacatgaatgtatccaaa 167  Q
    |||||||||||||||||||||||||||||    
T  42982615 caactcacttttacatgaatgtatccaaa 42982643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 31824 - 31879
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 131  Q
    |||||||| ||||||||||||||||||||||||||| ||| | |||||||||||||    
T  31824 aattgattatacttgaagctaggatttgtagcttttgattattgaattgattttca 31879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 365
Target Start/End: Original strand, 31719 - 31820
Alignment:
Q  263 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgc 362  Q
    ||||||||||||| ||||||| ||| |||||||||| |||||||||| ||||||| || |||| ||||||||| | | | | ||||| |||||||| |||    
T  31719 tgtatgtttggttccacttctagagtgaccaaaatt-gattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgattctgc 31817  T
Q  363 ctc 365  Q
    |||    
T  31818 ctc 31820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 31900 - 31932
Alignment:
Q  139 caactcacttttacatgaatgtatccaaacaca 171  Q
    |||||||||||||||| ||||||||||||||||    
T  31900 caactcacttttacataaatgtatccaaacaca 31932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 220691 - 220638
Alignment:
Q  76 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 129  Q
    ||||||||||||||||||||| | |||| || |||| |||||||||||||||||    
T  220691 aattgattctacttgaagctatgttttgcagtttttgattctagaattgatttt 220638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 14130 - 14098
Alignment:
Q  137 ttcaactcacttttacatgaatgtatccaaaca 169  Q
    ||||||||||||| |||||||||||||||||||    
T  14130 ttcaactcactttcacatgaatgtatccaaaca 14098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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