View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3059_low_9 (Length: 378)
Name: NF3059_low_9
Description: NF3059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3059_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 140 - 367
Target Start/End: Complemental strand, 38643411 - 38643184
Alignment:
| Q |
140 |
ccatgatgagtttcttctatgttccattattcttggggtgagttgagtgaaatgtgaataatggcaactagcagaggcaaactaacaactaagtactagc |
239 |
Q |
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| T |
38643411 |
ccatgatgagtttcttctatgttccattattcttggggtgagttgagtgaaatgtgaataatggcaactagcagaggcaaactaacaactaagtactagc |
38643312 |
T |
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| Q |
240 |
ttttatgacaggctcagtggatgagaatgtaggattcatatgctgccagctatggtaacatgtgatttatatttaagaagccttgtgtttctgttgaatt |
339 |
Q |
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| T |
38643311 |
ttttatgacaggctcagtggatgagaatgtaggattcatatgctgccagctatggtaacatgtgatttatatttaagaagccttgtgtttttgttgaatt |
38643212 |
T |
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| Q |
340 |
actaaaatactactactcactatttcat |
367 |
Q |
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| T |
38643211 |
actaaaatactactactcactatttcat |
38643184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 38643550 - 38643466
Alignment:
| Q |
1 |
acttctgataattaacagttggcttttcaagattgtcaaaccagcctaaagaatctcccacggtgtaatatttgtaagctccaac |
85 |
Q |
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| T |
38643550 |
acttctgataattaacagttggcttttcaagattgtcaaaccagcctaaagaatctcccactgtgtaatttttgtaagctccaac |
38643466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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