View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3060-Insertion-1 (Length: 629)

Name: NF3060-Insertion-1
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3060-Insertion-1
NF3060-Insertion-1
[»] chr2 (1 HSPs)
chr2 (8-629)||(13713323-13713956)


Alignment Details
Target: chr2 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 8 - 629
Target Start/End: Complemental strand, 13713956 - 13713323
Alignment:
Q  8 ttttatttatgcaagtgtattatagttatttggtttggtatgtatgcatacacaatttgtccaaactaaacaagcttg------------agaatccatt 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||    
T  13713956 ttttatttatgcaagtgtattatagttatttggtttggtatgtatgcatacacaatttgtccaaattaaacaagcttgcacacaggcttgagaatccatt 13713857  T
Q  96 aatctcaaaactaaaaacacatacaatatgaatctctctgtatactataacatatatacagagtggccacatccatttatttaattcacattaaacacca 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13713856 aatctcaaaactaaaaacacatacaatatgaatctctctgtatactataacatatatacagaatggccacatccatttatttaattcacattaaacacca 13713757  T
Q  196 cacttcttatctatcttaccttacttgtcatcaaaactaccatggttgaagctcaatggcacttcaaaaggactaatattaaaaggcctctgaccaatat 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13713756 cacttcttatctatcttaccttacttgtcatcaaaactaccatggttgaagctcaatggcacttcaaaaggactaatatcaaaaggcctctgaccaatat 13713657  T
Q  296 aattaccaggtggatcatagttacaactaataatggtgctacggccatcattacactttaccttagcacatccaacccgaaccgaatcgcgccagacaac 395  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13713656 aattaccaggtggatcatagttacaactaataatggtgctacgaccatcattacacttaaccttagcacatccaacccgaaccgaatcgcgccagacaac 13713557  T
Q  396 ttgagtataatgtccacactgataaccagcagcacatgaattactgttgtaattatagtatttcttctctccgatccacatggtaacagcagctgttcct 495  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13713556 ttgagtataatgtccacactgataaccaacagcacatgaattactgttgtaattatagtacttcttctctccgatccacatggtaacagcagctgttcct 13713457  T
Q  496 gtcatgtcaccactgctccatgctaagttttctccatatggacccttggagtgtaccattttgcagtttgcttttaatttgtttacataggtttctgcat 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13713456 gtcatgtcaccactgctccatgctaagttttctccatatggacccttggagtgtaccattttgcagtttgcttttaatttgtttacataggtttctgcat 13713357  T
Q  596 aggatgcaacttttgcatcccaagatattgggcc 629  Q
    ||||||||||||||||||||||||||||||||||    
T  13713356 aggatgcaacttttgcatcccaagatattgggcc 13713323  T

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