View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3060-Insertion-11 (Length: 700)

Name: NF3060-Insertion-11
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3060-Insertion-11
NF3060-Insertion-11
[»] chr5 (17 HSPs)
chr5 (8-700)||(9828733-9829431)
chr5 (603-692)||(37873619-37873709)
chr5 (602-690)||(13166890-13166979)
chr5 (602-689)||(27336732-27336820)
chr5 (603-676)||(26212564-26212638)
chr5 (602-690)||(14423716-14423805)
chr5 (602-690)||(33692035-33692124)
chr5 (602-690)||(35310486-35310575)
chr5 (630-695)||(43115466-43115531)
chr5 (602-692)||(3114143-3114234)
chr5 (633-695)||(34335370-34335432)
chr5 (599-676)||(43129586-43129664)
chr5 (611-675)||(8858969-8859034)
chr5 (649-692)||(14723272-14723315)
chr5 (602-691)||(15292006-15292096)
chr5 (602-690)||(25663012-25663101)
chr5 (644-692)||(430638-430686)
[»] chr8 (13 HSPs)
chr8 (603-695)||(39434700-39434793)
chr8 (602-686)||(500269-500354)
chr8 (603-676)||(3188021-3188095)
chr8 (606-695)||(36004155-36004245)
chr8 (604-692)||(42922109-42922198)
chr8 (592-690)||(6592613-6592712)
chr8 (602-676)||(8619866-8619941)
chr8 (633-690)||(38815332-38815389)
chr8 (602-693)||(24125063-24125155)
chr8 (602-676)||(25021794-25021869)
chr8 (611-668)||(8882387-8882445)
chr8 (638-692)||(10189579-10189633)
chr8 (602-670)||(35739966-35740035)
[»] chr4 (13 HSPs)
chr4 (602-692)||(56462087-56462177)
chr4 (602-695)||(53619619-53619713)
chr4 (602-674)||(26521542-26521615)
chr4 (602-675)||(30940719-30940793)
chr4 (605-685)||(23255747-23255828)
chr4 (603-668)||(50000906-50000972)
chr4 (602-690)||(132423-132512)
chr4 (633-695)||(45760846-45760908)
chr4 (602-695)||(55933442-55933536)
chr4 (649-692)||(24719970-24720013)
chr4 (602-695)||(12918352-12918446)
chr4 (642-690)||(6865841-6865889)
chr4 (651-695)||(28883181-28883225)
[»] chr3 (14 HSPs)
chr3 (602-690)||(39583209-39583298)
chr3 (603-690)||(44198805-44198893)
chr3 (642-695)||(38146089-38146142)
chr3 (602-692)||(26772794-26772885)
chr3 (614-692)||(38670873-38670951)
chr3 (602-690)||(37132979-37133068)
chr3 (630-670)||(26856771-26856811)
chr3 (603-694)||(46940751-46940843)
chr3 (633-692)||(52741524-52741583)
chr3 (599-676)||(3443289-3443367)
chr3 (633-695)||(51234649-51234711)
chr3 (633-690)||(7900896-7900953)
chr3 (638-690)||(53785747-53785799)
chr3 (649-695)||(54879746-54879792)
[»] chr1 (12 HSPs)
chr1 (602-689)||(19035486-19035574)
chr1 (602-676)||(50161397-50161472)
chr1 (602-690)||(20259777-20259866)
chr1 (602-690)||(34644604-34644693)
chr1 (602-690)||(22346933-22347022)
chr1 (646-695)||(36777704-36777753)
chr1 (602-690)||(31737303-31737392)
chr1 (604-692)||(36486922-36487011)
chr1 (638-690)||(45659665-45659717)
chr1 (599-690)||(2764517-2764609)
chr1 (633-689)||(21473042-21473098)
chr1 (642-690)||(29169814-29169862)
[»] chr6 (12 HSPs)
chr6 (604-690)||(4206578-4206665)
chr6 (602-692)||(17249285-17249376)
chr6 (619-690)||(4165919-4165991)
chr6 (603-690)||(33220692-33220780)
chr6 (602-686)||(959622-959707)
chr6 (602-692)||(357697-357788)
chr6 (602-676)||(34168920-34168995)
chr6 (633-690)||(34304534-34304591)
chr6 (603-690)||(45658-45746)
chr6 (611-690)||(34415474-34415554)
chr6 (604-695)||(3714950-3715042)
chr6 (644-692)||(6225108-6225156)
[»] chr7 (16 HSPs)
chr7 (602-695)||(28517267-28517361)
chr7 (599-690)||(19277331-19277423)
chr7 (604-690)||(30216040-30216127)
chr7 (602-690)||(4501296-4501385)
chr7 (602-690)||(21326818-21326907)
chr7 (604-670)||(43856932-43856999)
chr7 (604-676)||(983001-983074)
chr7 (602-690)||(5825311-5825398)
chr7 (644-692)||(23793048-23793096)
chr7 (592-676)||(2904417-2904502)
chr7 (602-694)||(3676673-3676766)
chr7 (602-691)||(9281112-9281201)
chr7 (602-691)||(9292083-9292172)
chr7 (604-692)||(27521507-27521596)
chr7 (602-692)||(10905154-10905244)
chr7 (633-690)||(24527627-24527684)
[»] chr2 (13 HSPs)
chr2 (612-693)||(9685405-9685487)
chr2 (602-690)||(4413046-4413135)
chr2 (602-690)||(5532457-5532546)
chr2 (602-689)||(23484918-23485006)
chr2 (604-690)||(28225038-28225125)
chr2 (604-690)||(41867890-41867977)
chr2 (616-692)||(33612542-33612618)
chr2 (602-692)||(2888552-2888643)
chr2 (602-690)||(19161763-19161852)
chr2 (602-695)||(27502395-27502489)
chr2 (615-695)||(3968402-3968483)
chr2 (642-690)||(17344676-17344724)
chr2 (650-690)||(32029115-32029155)
[»] scaffold0490 (1 HSPs)
scaffold0490 (602-690)||(6372-6461)
[»] scaffold0148 (1 HSPs)
scaffold0148 (606-686)||(33292-33373)
[»] scaffold0031 (1 HSPs)
scaffold0031 (602-695)||(49444-49538)
[»] scaffold1768 (1 HSPs)
scaffold1768 (602-692)||(164-255)


Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 8 - 700
Target Start/End: Original strand, 9828733 - 9829431
Alignment:
Q  8 gtcggtcggtgatccatgtttttattggttttatggagtcctaaactaattttcattttgcaaaataattggaaaacactattttgtaaattata--aat 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  9828733 gtcggtcggtgatccatgtttttattggttttatggagtcctaaactaattttcattttgcaaaataattggaaaacactattttgtaaattatataaat 9828832  T
Q  106 gtcgaagacaaaaaccagttgtgtcttagttttatgaatgtgttgatgttaagaatgcatgtttaacaaacattggtaactttgtttgcaagatattttt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9828833 gtcgaagacaaaaaccagttgtgtcttagttttatgaatgtgttgatgttaagaatgcatgtttaacaaacattggtaactttgtttgcaagatattttt 9828932  T
Q  206 aatttataggattttaatgtgaaagtgtagaatgtgaattttcttagcctcgcatttgtatataattttgatactctattttaaattggttcttatttta 305  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9828933 aatttataggattttaatgtgaaagtgtagaatgtgaatttttttagcctcgcatttgtaaataattttgatactctattttaaattggttcttatttta 9829032  T
Q  306 tttagaactactgtattttgttatatatttcaaattgagatttagggtgtcacacaacggctgcacattgctttatccatttnnnnnnnnnnnttgaagt 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||           |||||||    
T  9829033 tttagaactactgtattttgttatatatttcaaattgagatttagggtgtcacacaacggctgcacattgctttgtccattt--aaaaaaaaattgaagt 9829130  T
Q  406 cattaattacagtaacaagcttccatt-agatatagaaaagtaaagttgtggccatcgtcgtccacaagcttgctttattgtgttttcggggggctggtt 504  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  9829131 cattaattacagtaacaagcttccattaaaatatagaaaagtaaagttgtggcca---tcgtccacaagcttgctttattgtgttttcggggggctggtt 9829227  T
Q  505 ccaaaattccaagattctccttttcatatgtactattcctta-tttgattgcggtttcaccacttgtaagactaagagtcagatctt--------agata 595  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||||| ||||||        |||||    
T  9829228 ccaaaattccaagattctccttttcatatgtactattccttattttgactgcggtttcaccacttgtaagattaggagtcggatcttttatagtaagata 9829327  T
Q  596 gatagtcctaaaagttgcgtcaagcaaagtggctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9829328 gatagccctaaaagttgcgt-aagcaaagtggctaacatgataaaatgtgttttgacaatcaacatgcttttataccatttatatttgacacttttgact 9829426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 603 - 692
Target Start/End: Original strand, 37873619 - 37873709
Alignment:
Q  603 ctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    |||||||||||||||||||||||||| ||  |||| |||||||||| |||||||||||||| ||||||| |||||   |||||||||||||    
T  37873619 ctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacacttttg 37873709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 602 - 690
Target Start/End: Original strand, 13166890 - 13166979
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||  |||||||||||||||||||||  |||| |||||||||| |||||||||||||||||||||| |||||   |||||||||||    
T  13166890 cctaaaatctgcgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 13166979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 602 - 689
Target Start/End: Complemental strand, 27336820 - 27336732
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacactt 689  Q
    |||||||||||||||||||||||||| | || |||| ||| |||||| ||||||||||||| |||||||| |||||   ||||||||||    
T  27336820 cctaaaagttgcgtcaagcaaagtggtcaaacatgagaaatcgtgttctgacaatcaacatacttttataccatttgcttttgacactt 27336732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 676
Target Start/End: Original strand, 26212564 - 26212638
Alignment:
Q  603 ctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcattt 676  Q
    ||||||||||||||||||||||||| | || |||| ||||||| || |||| ||||||||||||||||| |||||    
T  26212564 ctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtattctgacgatcaacatgcttttataccattt 26212638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 690
Target Start/End: Complemental strand, 14423805 - 14423716
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggct-aatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||  |||||||||||||||| |  || |||| |||||||||| |||||||||||||||||||||| |||||   |||||||||||    
T  14423805 cctaaaaaatgcgtcaagcaaagtgaccgaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 14423716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 690
Target Start/End: Original strand, 33692035 - 33692124
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||| |||||||||||||||||| ||  |||| ||| |||||| ||||||||||||||||||| || |||||   |||||||||||    
T  33692035 cctaaaagctgcgtcaagcaaagtggccaaacatgacaaaacgtgttatgacaatcaacatgcttttgtaccatttgcttttgacacttt 33692124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 690
Target Start/End: Complemental strand, 35310575 - 35310486
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||| |||||||||||||||||| ||  |||| ||||| |||| |||||||||||||||||||||| ||| |   |||||||||||    
T  35310575 cctaaaagatgcgtcaagcaaagtggccaaacatgagaaagcatgttctgacaatcaacatgcttttataccatctgcttttgacacttt 35310486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 630 - 695
Target Start/End: Original strand, 43115466 - 43115531
Alignment:
Q  630 aatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    ||||||| ||||||||||||||||||||||||||||| ||| |||||   |||||||||| |||||    
T  43115466 aatatgagaaagcgtgttttgacaatcaacatgctttcatagcatttgcttttgacacttctgact 43115531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 602 - 692
Target Start/End: Original strand, 3114143 - 3114234
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    |||||||||||| |||| ||||||||| ||  |||| ||||| |||| ||||| |||||||| ||||||| ||||| | |||||||||||||    
T  3114143 cctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 3114234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 633 - 695
Target Start/End: Complemental strand, 34335432 - 34335370
Alignment:
Q  633 atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    |||| |||||||||  |||||||||||||||||||||| ||||| | ||||||||||| ||||    
T  34335432 atgagaaagcgtgtcctgacaatcaacatgcttttataccatttgtttttgacactttcgact 34335370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 676
Target Start/End: Complemental strand, 43129664 - 43129586
Alignment:
Q  599 agtcctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcattt 676  Q
    ||||||||||| ||||||||||||||||| | || |||| ||| |||||| |||||||||||||| |||| || |||||    
T  43129664 agtcctaaaagatgcgtcaagcaaagtggtcaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccattt 43129586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 611 - 675
Target Start/End: Complemental strand, 8859034 - 8858969
Alignment:
Q  611 tgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatt 675  Q
    ||||||||||||||| | | || |||| |||||||||| |||||||||||||| ||||||||||||    
T  8859034 tgcgtcaagcaaagtagtcaaacatgagaaagcgtgttctgacaatcaacatgtttttatatcatt 8858969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 692
Target Start/End: Original strand, 14723272 - 14723315
Alignment:
Q  649 tgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    |||||||||||||||||||||||||||| | ||| |||||||||    
T  14723272 tgacaatcaacatgcttttatatcatttgttttttacacttttg 14723315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 691
Target Start/End: Original strand, 15292006 - 15292096
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacactttt 691  Q
    ||||||||| ||||||| ||||||||| ||  |||| ||| |||||| |||||||||||||| |||||||  |||| | ||| ||||||||    
T  15292006 cctaaaagtggcgtcaaacaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttatacaatttgttttttacactttt 15292096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 690
Target Start/End: Original strand, 25663012 - 25663101
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||| ||| |||| ||||||||| ||  |||| |||||||||| ||| |||||||||| ||||||| |||||   |||||||||||    
T  25663012 cctaaaagctgcatcaaacaaagtggccaaacatgagaaagcgtgttctgataatcaacatgtttttataccatttgcttttgacacttt 25663101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 644 - 692
Target Start/End: Complemental strand, 430686 - 430638
Alignment:
Q  644 tgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    |||| |||||||||||||||||||||| |||||   |||||||||||||    
T  430686 tgttctgacaatcaacatgcttttataccatttgcttttgacacttttg 430638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 603 - 695
Target Start/End: Complemental strand, 39434793 - 39434700
Alignment:
Q  603 ctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    |||||||||||||||||||||||||| ||  |||| |||||||||| |||||||||||||||||||||| ||||| | ||||||||||||||||    
T  39434793 ctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgtttttgacacttttgact 39434700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 602 - 686
Target Start/End: Complemental strand, 500354 - 500269
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgaca 686  Q
    ||||||||||||||||||||||||||| ||  |||| ||| |||||| |||||||||||||||||||||| ||||||  |||||||    
T  500354 cctaaaagttgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgcttttataccatttacttttgaca 500269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 676
Target Start/End: Complemental strand, 3188095 - 3188021
Alignment:
Q  603 ctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcattt 676  Q
    ||||||||||| |||||||||||||| ||  ||||  ||||||||| |||||||||||||||||||||| |||||    
T  3188095 ctaaaagttgcatcaagcaaagtggcaaaacatgaggaagcgtgttctgacaatcaacatgcttttataccattt 3188021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 606 - 695
Target Start/End: Complemental strand, 36004245 - 36004155
Alignment:
Q  606 aaagttgcgtcaagcaaagtggctaa-tatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    ||||||| || ||| ||||||||||| ||||| |||| | ||| |||||||||||||| ||||||| |||||| |||||||| ||||||||    
T  36004245 aaagttgggtaaagtaaagtggctaaatatgacaaagtgcgttatgacaatcaacatgtttttataccatttacatttgacatttttgact 36004155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 604 - 692
Target Start/End: Original strand, 42922109 - 42922198
Alignment:
Q  604 taaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    ||||||||||||||| |||| ||| | ||| ||| ||| ||||||||||||||||| ||||||||| |||||||   |||||||||||||    
T  42922109 taaaagttgcgtcaaacaaaatggtcaaatttgagaaaacgtgttttgacaatcaaaatgcttttaaatcatttgcctttgacacttttg 42922198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 592 - 690
Target Start/End: Complemental strand, 6592712 - 6592613
Alignment:
Q  592 gatagatagtcctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||| |||| |||||| ||||||||||||||||| | || |||| |||||||||| | |||||||||||| ||||| | |||||   |||||||||||    
T  6592712 gatagacagtcgtaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacacttt 6592613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 602 - 676
Target Start/End: Complemental strand, 8619941 - 8619866
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcattt 676  Q
    |||||||||||||||||| ||| ||| | || |||| ||||||| |||||||||||||| |||||||||| |||||    
T  8619941 cctaaaagttgcgtcaagtaaaatggtcaaacatgaaaaagcgtattttgacaatcaacgtgcttttataccattt 8619866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 690
Target Start/End: Complemental strand, 38815389 - 38815332
Alignment:
Q  633 atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||| |||||||||| |||||||||||||||||||||| |||||   |||||||||||    
T  38815389 atgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 38815332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 693
Target Start/End: Complemental strand, 24125155 - 24125063
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttga 693  Q
    |||||||| ||| ||||||||| |||| ||  |||| |||||||| | |||||||||||||||||||||| |||||   ||||||| ||||||    
T  24125155 cctaaaagctgcatcaagcaaaatggccaaacatgagaaagcgtgctctgacaatcaacatgcttttataccatttgcttttgacaattttga 24125063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 676
Target Start/End: Original strand, 25021794 - 25021869
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaa-tatgataaagcgtgttttgacaatcaacatgcttttatatcattt 676  Q
    ||||||||||| ||||||||||||||  || ||||| |||| ||||| | |||||||||||| ||||||| |||||    
T  25021794 cctaaaagttgtgtcaagcaaagtggtgaaatatgagaaagtgtgttctcacaatcaacatgtttttataccattt 25021869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 668
Target Start/End: Complemental strand, 8882445 - 8882387
Alignment:
Q  611 tgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgctttta 668  Q
    ||||||||||||||||| | || |||| |||||||||| |||||||||| |||||||||    
T  8882445 tgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaatatgctttta 8882387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 638 - 692
Target Start/End: Complemental strand, 10189633 - 10189579
Alignment:
Q  638 aaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    ||||| |||| |||||||||||||| |||||||||||||  |||||||| |||||    
T  10189633 aaagcatgttctgacaatcaacatgtttttatatcatttgcatttgacatttttg 10189579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 670
Target Start/End: Original strand, 35739966 - 35740035
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttata 670  Q
    ||||||||||| || |||||||||||| ||  |||| |||||| ||| |||||||||||||| |||||||    
T  35739966 cctaaaagttgtgttaagcaaagtggccaaacatgagaaagcgggttctgacaatcaacatgtttttata 35740035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 602 - 692
Target Start/End: Original strand, 56462087 - 56462177
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||| ||||||| ||||| | || ||||||||||    
T  56462087 cctaaaagttgcgtcaaacaaagtggcaaacatgataaagcgtgttctgacaatcaacatgtttttataccatttgttttagacacttttg 56462177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 602 - 695
Target Start/End: Complemental strand, 53619713 - 53619619
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    |||||||| |||||||||||||||||| ||  |||| ||| |||||| |||||||||||||||||||||| ||||| | ||||||||||||||||    
T  53619713 cctaaaagctgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgcttttataccatttgtttttgacacttttgact 53619619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 602 - 674
Target Start/End: Complemental strand, 26521615 - 26521542
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcat 674  Q
    ||||||||||||||||| ||||||||||||  |||| ||| |||||| ||||||||||||||||||||||||||    
T  26521615 cctaaaagttgcgtcaaacaaagtggctaaacatgaaaaaacgtgttatgacaatcaacatgcttttatatcat 26521542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 602 - 675
Target Start/End: Original strand, 30940719 - 30940793
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatt 675  Q
    |||||||||||||||||| ||||||| | || |||| |||||||||| |||||||||||||||||||||| ||||    
T  30940719 cctaaaagttgcgtcaagtaaagtggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatt 30940793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 605 - 685
Target Start/End: Complemental strand, 23255828 - 23255747
Alignment:
Q  605 aaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgac 685  Q
    |||||||||||||||||||||||| ||  |||| |||||||||| ||||||| |||||||||||||| ||||| | ||||||    
T  23255828 aaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaattaacatgcttttataccatttgtttttgac 23255747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 668
Target Start/End: Original strand, 50000906 - 50000972
Alignment:
Q  603 ctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgctttta 668  Q
    ||||||| ||||||||||||||||| | || |||| |||||||||| ||||||||||||||||||||    
T  50000906 ctaaaagctgcgtcaagcaaagtggtcaaacatgagaaagcgtgttctgacaatcaacatgctttta 50000972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 690
Target Start/End: Complemental strand, 132512 - 132423
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||| ||||||||||||| |||| ||  |||| ||| |||||| |||||||||||||||||||||| ||||| | ||| |||||||    
T  132512 cctaaaagctgcgtcaagcaaaatggcaaaacatgagaaatcgtgttctgacaatcaacatgcttttataccatttgttttttacacttt 132423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 633 - 695
Target Start/End: Original strand, 45760846 - 45760908
Alignment:
Q  633 atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    |||| ||||||||||||||||||||||||  ||||||||| |||  |||||||| ||||||||    
T  45760846 atgagaaagcgtgttttgacaatcaacatatttttatatcttttgcatttgacatttttgact 45760908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 695
Target Start/End: Original strand, 55933442 - 55933536
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    ||||||||||||||||| ||||||||| ||  |||| ||||  |||| | |||||||||||||||||||| |||||   ||||||||||| ||||    
T  55933442 cctaaaagttgcgtcaaacaaagtggccaaacatgagaaagtttgttctaacaatcaacatgcttttataccatttgcttttgacactttcgact 55933536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 692
Target Start/End: Complemental strand, 24720013 - 24719970
Alignment:
Q  649 tgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    |||||||||||||| ||||||||||||| | |||||||||||||    
T  24720013 tgacaatcaacatgtttttatatcatttgtgtttgacacttttg 24719970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 695
Target Start/End: Original strand, 12918352 - 12918446
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    ||||||||||||||||| |||||||| | || || | ||| |||||| ||||||||||||  ||||||||  |||||  ||||||||||| ||||    
T  12918352 cctaaaagttgcgtcaaacaaagtggtcaaacataagaaatcgtgttctgacaatcaacacacttttatactatttacttttgacactttcgact 12918446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 642 - 690
Target Start/End: Original strand, 6865841 - 6865889
Alignment:
Q  642 cgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||| |||| |||||||||||||||||||||||   |||||||||||    
T  6865841 cgtgttctgactatcaacatgcttttatatcatttgcttttgacacttt 6865889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 651 - 695
Target Start/End: Original strand, 28883181 - 28883225
Alignment:
Q  651 acaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    |||| ||||||| ||||||||||||||| || |||||||||||||    
T  28883181 acaaccaacatgtttttatatcatttatgttagacacttttgact 28883225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 602 - 690
Target Start/End: Original strand, 39583209 - 39583298
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||| |||||||||||||||||| ||  |||| |||||||||| |||||||||||||||||||||||||||| | || ||||||||    
T  39583209 cctaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttatatcatttgttttcgacacttt 39583298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 603 - 690
Target Start/End: Complemental strand, 44198893 - 44198805
Alignment:
Q  603 ctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||||||||||||||||||||| ||  |||| |||||||||| ||| |||||||||||||||||| |||||   |||||||||||    
T  44198893 ctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgagaatcaacatgcttttataccatttgcttttgacacttt 44198805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 695
Target Start/End: Complemental strand, 38146142 - 38146089
Alignment:
Q  642 cgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||||||||||||    
T  38146142 cgtgttttgacaatcaacatgtttttataccatttacatttgacacttttgact 38146089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 602 - 692
Target Start/End: Complemental strand, 26772885 - 26772794
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    ||||||||||| ||||||||||||||| ||  || | ||| |||||| |||||||||||||||||||||| |||||   |||||||||||||    
T  26772885 cctaaaagttgtgtcaagcaaagtggccaaacatcagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttg 26772794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 614 - 692
Target Start/End: Original strand, 38670873 - 38670951
Alignment:
Q  614 gtcaagcaaagtggctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    |||||| |||||| | || |||| |||||||||| ||||||||||||||||||||||  |||| | |||||||||||||    
T  38670873 gtcaagtaaagtgtcaaacatgagaaagcgtgttctgacaatcaacatgcttttatacaatttgtttttgacacttttg 38670951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 690
Target Start/End: Original strand, 37132979 - 37133068
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||| | ||||||||||||||| |||  |||| |||||||||| |||||||||||||| ||||||| ||||| | ||| |||||||    
T  37132979 cctaaaagctacgtcaagcaaagtggttaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgttttttacacttt 37133068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 630 - 670
Target Start/End: Original strand, 26856771 - 26856811
Alignment:
Q  630 aatatgataaagcgtgttttgacaatcaacatgcttttata 670  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  26856771 aatatgataaagcgtgttgtgacaatcaacatgcttttata 26856811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 694
Target Start/End: Original strand, 46940751 - 46940843
Alignment:
Q  603 ctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgac 694  Q
    ||||||| |||||||||||||||||| ||  || | ||| | ||||  ||||||||||||||||||||| ||||| | |||||||||||||||    
T  46940751 ctaaaagatgcgtcaagcaaagtggccaaacattagaaaacatgttccgacaatcaacatgcttttataccatttgtttttgacacttttgac 46940843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 633 - 692
Target Start/End: Original strand, 52741524 - 52741583
Alignment:
Q  633 atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    |||| |||||||||| |||||||||||||||||||||| |||||   |||||||||||||    
T  52741524 atgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttg 52741583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 676
Target Start/End: Original strand, 3443289 - 3443367
Alignment:
Q  599 agtcctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcattt 676  Q
    ||||||||||||||||||||||||| ||| | || |||| |||| || || | |||||||||||||||||||| |||||    
T  3443289 agtcctaaaagttgcgtcaagcaaaatggccaaacatgaaaaagtgtattctaacaatcaacatgcttttataccattt 3443367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 633 - 695
Target Start/End: Complemental strand, 51234711 - 51234649
Alignment:
Q  633 atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    |||| ||||| |||| |||||| ||||||||||||||| ||||||| ||||||||||| ||||    
T  51234711 atgaaaaagcatgttatgacaaccaacatgcttttataccatttatttttgacactttcgact 51234649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 690
Target Start/End: Complemental strand, 7900953 - 7900896
Alignment:
Q  633 atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||| ||||||| || |||||||||||||||||||||| ||||| | |||||||||||    
T  7900953 atgagaaagcgttttctgacaatcaacatgcttttataccatttgtttttgacacttt 7900896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 638 - 690
Target Start/End: Complemental strand, 53785799 - 53785747
Alignment:
Q  638 aaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||||| |||||||||||||||||||||| |||||   |||||||||||    
T  53785799 aaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 53785747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 649 - 695
Target Start/End: Original strand, 54879746 - 54879792
Alignment:
Q  649 tgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    |||||||||||||| ||| ||||||||||| ||||| ||||||||||    
T  54879746 tgacaatcaacatgttttaatatcatttatgtttgatacttttgact 54879792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 602 - 689
Target Start/End: Complemental strand, 19035574 - 19035486
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacactt 689  Q
    |||||||| |||||||||||||||||| ||  |||| |||||||||| |||||||||||||||||||||| ||||||  ||||||||||    
T  19035574 cctaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttacttttgacactt 19035486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 602 - 676
Target Start/End: Original strand, 50161397 - 50161472
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcattt 676  Q
    |||||||||||||||||||||||||| | || |||| |||||||||| | ||||||||||||||||||||||||||    
T  50161397 cctaaaagttgcgtcaagcaaagtggacaaacatgagaaagcgtgttctcacaatcaacatgcttttatatcattt 50161472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 602 - 690
Target Start/End: Original strand, 20259777 - 20259866
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaata-tgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||| | ||||||||||||||| ||| | ||| |||||||||| |||||||||||||| ||||||| |||||||  ||||||||||    
T  20259777 cctaaaagctacgtcaagcaaagtggttaaaaatgagaaagcgtgttctgacaatcaacatgtttttataccatttattgttgacacttt 20259866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 602 - 690
Target Start/End: Complemental strand, 34644693 - 34644604
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    ||||||||||||||||| ||||||||| ||  |||| |||||||||| |||||| | ||||||||||||| ||||| | |||||||||||    
T  34644693 cctaaaagttgcgtcaaacaaagtggccaaacatgagaaagcgtgttctgacaacctacatgcttttataccatttgtttttgacacttt 34644604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 690
Target Start/End: Complemental strand, 22347022 - 22346933
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaa-tatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    ||||||||||  ||||||||||||||| || ||||| |||||||||| ||||||||||||||| |||||| | |||   |||||||||||    
T  22347022 cctaaaagttatgtcaagcaaagtggccaaatatgagaaagcgtgttctgacaatcaacatgcgtttataccttttgcttttgacacttt 22346933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 646 - 695
Target Start/End: Complemental strand, 36777753 - 36777704
Alignment:
Q  646 ttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    ||||||||||||||||| ||||||||||||| || |||||||||||||||    
T  36777753 ttttgacaatcaacatgattttatatcatttgtacttgacacttttgact 36777704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 602 - 690
Target Start/End: Original strand, 31737303 - 31737392
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    ||||||||  ||||||||||||||||| ||  |||| ||| | | || |||||||||||||||||||||| ||||| | |||||||||||    
T  31737303 cctaaaagcggcgtcaagcaaagtggccaaacatgagaaaacatattctgacaatcaacatgcttttataccatttgtttttgacacttt 31737392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 692
Target Start/End: Complemental strand, 36487011 - 36486922
Alignment:
Q  604 taaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    ||||| |||| ||||| ||||||| | ||||||| ||||||||||||||||||||| ||  |||||||| ||||   |||||||||||||    
T  36487011 taaaaattgcatcaagtaaagtggtcaaatatgagaaagcgtgttttgacaatcaatatctttttatataatttgcttttgacacttttg 36486922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 638 - 690
Target Start/End: Original strand, 45659665 - 45659717
Alignment:
Q  638 aaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||||| |||||||||||||||||||||| |||||   |||||||||||    
T  45659665 aaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 45659717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 599 - 690
Target Start/End: Complemental strand, 2764609 - 2764517
Alignment:
Q  599 agtcctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||||||||| ||||  |||||||| | || |||| ||| ||||||  ||||||||||||||||||||  |||||   |||||||||||    
T  2764609 agtcctaaaagttgtgtcagacaaagtggtcaaacatgagaaaacgtgttccgacaatcaacatgcttttatgccattttcttttgacacttt 2764517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 633 - 689
Target Start/End: Complemental strand, 21473098 - 21473042
Alignment:
Q  633 atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacactt 689  Q
    |||| |||||||||| |||||||||||||| ||||||| |||||   ||||||||||    
T  21473098 atgagaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacactt 21473042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 642 - 690
Target Start/End: Original strand, 29169814 - 29169862
Alignment:
Q  642 cgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||| |||||||||||||||||||||| |||||   |||||||||||    
T  29169814 cgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 29169862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 604 - 690
Target Start/End: Original strand, 4206578 - 4206665
Alignment:
Q  604 taaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    ||||||| ||||||||||||||||||||  |||| |||||||||| ||||||| ||||||||||||||||||||   |||||||||||    
T  4206578 taaaagtggcgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatgaacatgcttttatatcatttgcttttgacacttt 4206665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 602 - 692
Target Start/End: Original strand, 17249285 - 17249376
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    ||||||||||||||||| ||||||||| ||  |||| |||| ||||| |||||||||||||||||||||| |||||   |||||||||||||    
T  17249285 cctaaaagttgcgtcaaacaaagtggccaaacatgagaaagtgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttg 17249376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 619 - 690
Target Start/End: Original strand, 4165919 - 4165991
Alignment:
Q  619 gcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||||||||  |||| |||||||||| ||||||||||||||||||||||||||||   |||||||||||    
T  4165919 gcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttatatcatttgcttttgacacttt 4165991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 603 - 690
Target Start/End: Original strand, 33220692 - 33220780
Alignment:
Q  603 ctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    ||||||| ||| |||||||||||||| ||  |||| ||||||||| ||||||||||||||||||||||| |||||   |||||||||||    
T  33220692 ctaaaagctgcatcaagcaaagtggccaaacatgagaaagcgtgtgttgacaatcaacatgcttttataccatttgcttttgacacttt 33220780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 686
Target Start/End: Complemental strand, 959707 - 959622
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaa-tatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgaca 686  Q
    ||||||||||| ||||||||||||||||||  |||| ||| |||||| ||||||||||||||  |||||| ||||| | |||||||    
T  959707 cctaaaagttgtgtcaagcaaagtggctaaccatgagaaaacgtgttctgacaatcaacatgtctttataccatttgtttttgaca 959622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 602 - 692
Target Start/End: Original strand, 357697 - 357788
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    |||||||| | |||||||||||||||| ||  |||| |||||||||| ||||||| |||||||||||||| | ||| | ||| |||||||||    
T  357697 cctaaaagcttcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatgaacatgcttttataacctttgtttttaacacttttg 357788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 602 - 676
Target Start/End: Complemental strand, 34168995 - 34168920
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcattt 676  Q
    ||||||| ||||||||||||||||||| ||  |||| ||||| ||||| ||||| ||||||||||||||| |||||    
T  34168995 cctaaaatttgcgtcaagcaaagtggccaaacatgagaaagcatgtttggacaagcaacatgcttttataccattt 34168920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 690
Target Start/End: Complemental strand, 34304591 - 34304534
Alignment:
Q  633 atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||| |||||||||| |||||||||||||||||||||| |||||   |||||||||||    
T  34304591 atgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 34304534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 690
Target Start/End: Original strand, 45658 - 45746
Alignment:
Q  603 ctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    ||||||| ||| ||||||||||||  | || |||| ||| |||||| |||||||||||||||||||||  ||||| | |||||||||||    
T  45658 ctaaaagctgcatcaagcaaagtgatcaaacatgagaaaacgtgttctgacaatcaacatgcttttattccatttgtttttgacacttt 45746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 611 - 690
Target Start/End: Complemental strand, 34415554 - 34415474
Alignment:
Q  611 tgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    ||||||||||||| |||| ||  |||| |||| ||||| |||||||||||||||||||||  ||||| | |||||||||||    
T  34415554 tgcgtcaagcaaaatggcgaaacatgagaaagtgtgttctgacaatcaacatgcttttatgccatttgtttttgacacttt 34415474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 604 - 695
Target Start/End: Complemental strand, 3715042 - 3714950
Alignment:
Q  604 taaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    ||||||||| ||||| |||| ||| |||  |||| ||| |||||| | ||||| |||||| ||||||||||| | | ||||||||||||||||    
T  3715042 taaaagttgtgtcaaacaaaatggttaaacatgagaaaacgtgttctcacaattaacatgtttttatatcatctgtttttgacacttttgact 3714950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 644 - 692
Target Start/End: Complemental strand, 6225156 - 6225108
Alignment:
Q  644 tgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    |||| ||||||||||||||||| ||| |||||| | |||||||||||||    
T  6225156 tgttgtgacaatcaacatgcttatatgtcatttgtgtttgacacttttg 6225108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 602 - 695
Target Start/End: Original strand, 28517267 - 28517361
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    |||||||| |||||||||||||||||| ||  |||| ||||||||||| ||||||||||||| ||||||| |||||   ||||||||||||||||    
T  28517267 cctaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgtttagacaatcaacatgtttttataccatttgcttttgacacttttgact 28517361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 599 - 690
Target Start/End: Complemental strand, 19277423 - 19277331
Alignment:
Q  599 agtcctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    ||||||||||| ||||||||||||||| || ||  |||| |||||||||| |||||||||||||||||||||| |||||   |||||||||||    
T  19277423 agtcctaaaagctgcgtcaagcaaagtagccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 19277331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 604 - 690
Target Start/End: Original strand, 30216040 - 30216127
Alignment:
Q  604 taaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||| ||||||||||||| ||| | ||||||| ||||||||||||||||||||||||| ||||||| |||||   |||||||||||    
T  30216040 taaaagctgcgtcaagcaaaatggtcaaatatgagaaagcgtgttttgacaatcaacatgtttttataccatttgcttttgacacttt 30216127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 602 - 690
Target Start/End: Complemental strand, 4501385 - 4501296
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||| |||||||| ||||||||| ||  |||| |||||||||| ||||||||||||||||||||||| ||||   |||||||||||    
T  4501385 cctaaaagctgcgtcaaacaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttatataatttgcttttgacacttt 4501296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 602 - 690
Target Start/End: Original strand, 21326818 - 21326907
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    ||||||||  ||||||||||||||||| ||  |||| |||||||||| |||||||||||||||||||||| |||||   |||||||||||    
T  21326818 cctaaaagccgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 21326907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 604 - 670
Target Start/End: Complemental strand, 43856999 - 43856932
Alignment:
Q  604 taaaagttgcgtcaagcaaagtggcta-atatgataaagcgtgttttgacaatcaacatgcttttata 670  Q
    |||||| |||||||| ||||||||||| | |||| |||||||||||||||||||||||||| ||||||    
T  43856999 taaaagatgcgtcaatcaaagtggctagacatgagaaagcgtgttttgacaatcaacatgcgtttata 43856932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 604 - 676
Target Start/End: Complemental strand, 983074 - 983001
Alignment:
Q  604 taaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcattt 676  Q
    |||||| |||||||||||||||||| ||  |||| ||| |||||| |||||||||||||||||||||| |||||    
T  983074 taaaagctgcgtcaagcaaagtggccaaacatgagaaatcgtgttctgacaatcaacatgcttttataccattt 983001  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 602 - 690
Target Start/End: Complemental strand, 5825398 - 5825311
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||| ||| |||||||||||| | || |||| || ||||||| |||||||||||||| ||||||| ||||||  |||||||||||    
T  5825398 cctaaaagctgcatcaagcaaagtg-caaacatgacaatgcgtgttatgacaatcaacatgtttttataccatttacttttgacacttt 5825311  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 644 - 692
Target Start/End: Complemental strand, 23793096 - 23793048
Alignment:
Q  644 tgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    |||||||||||||||||||||| ||||||| |||| |||||||||||||    
T  23793096 tgttttgacaatcaacatgcttctatatcaattatgtttgacacttttg 23793048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 676
Target Start/End: Complemental strand, 2904502 - 2904417
Alignment:
Q  592 gatagatagtcctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcattt 676  Q
    |||||| ||||||||||||| ||||||||||| | | | || |||| ||||| ||||  ||||||||||||| |||||||||||||    
T  2904502 gatagacagtcctaaaagttacgtcaagcaaaatagtcaaacatgagaaagcatgttccgacaatcaacatgattttatatcattt 2904417  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 602 - 694
Target Start/End: Complemental strand, 3676766 - 3676673
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgac 694  Q
    |||||||| ||||||||||||||||| | || || | |||||||||| | || ||||| ||||||||||| |||||   |||||||||||||||    
T  3676766 cctaaaagctgcgtcaagcaaagtggtcaaacatcagaaagcgtgttcttactatcaatatgcttttataccatttgcttttgacacttttgac 3676673  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 602 - 691
Target Start/End: Original strand, 9281112 - 9281201
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacactttt 691  Q
    |||||||| ||| ||||||||| | || || |||| |||||||||| | ||||||||||||||||||||  ||||  |||||||| ||||    
T  9281112 cctaaaagctgcatcaagcaaactagcaaacatgagaaagcgtgttctaacaatcaacatgcttttatactatttggatttgacattttt 9281201  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 602 - 691
Target Start/End: Original strand, 9292083 - 9292172
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacactttt 691  Q
    |||||||| ||| ||||||||| | || || |||| |||||||||| | ||||||||||||||||||||  ||||  |||||||| ||||    
T  9292083 cctaaaagctgcatcaagcaaactagcaaacatgagaaagcgtgttctaacaatcaacatgcttttatactatttggatttgacattttt 9292172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 692
Target Start/End: Complemental strand, 27521596 - 27521507
Alignment:
Q  604 taaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    |||||||||||| || |||||||| | || |||| ||| |||||| ||||||||||||||| ||||||  |||||  |||||||||||||    
T  27521596 taaaagttgcgttaaacaaagtggtcaaacatgagaaaacgtgttctgacaatcaacatgcatttatacaatttacttttgacacttttg 27521507  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 692
Target Start/End: Complemental strand, 10905244 - 10905154
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    |||||||| ||||||||||||||||| | ||||||| |||  ||||| ||||| ||||||||| |||||| |||||   |||||||||||||    
T  10905244 cctaaaagctgcgtcaagcaaagtggccaaatatgagaaaaagtgttctgacactcaacatgc-tttataccatttgcttttgacacttttg 10905154  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 633 - 690
Target Start/End: Complemental strand, 24527684 - 24527627
Alignment:
Q  633 atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||| ||| |||||| |||||||||||||||||||||| |||||   |||||||||||    
T  24527684 atgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 24527627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 612 - 693
Target Start/End: Original strand, 9685405 - 9685487
Alignment:
Q  612 gcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttga 693  Q
    ||||||||||||||||| ||  |||| |||||||||| |||||||||||||||||||||| |||||   ||||||||||||||    
T  9685405 gcgtcaagcaaagtggccaaacatgaaaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttga 9685487  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 602 - 690
Target Start/End: Original strand, 4413046 - 4413135
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||| || ||||||||||||||| ||  |||| |||||||||| |||||||||||||||||||||| |||||   |||||||||||    
T  4413046 cctaaaagctgtgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 4413135  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 602 - 690
Target Start/End: Complemental strand, 5532546 - 5532457
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||| ||||||||||||||||| | || |||| ||| |||||| ||||||||||||||||||||||  |||||  |||||||||||    
T  5532546 cctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgttgtgacaatcaacatgcttttatactatttacttttgacacttt 5532457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 602 - 689
Target Start/End: Original strand, 23484918 - 23485006
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaa-tatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacactt 689  Q
    |||||||| | |||||| ||||||||| || ||||| ||||| |||| |||||||||||||||||||||| ||||| | ||||||||||    
T  23484918 cctaaaagctacgtcaaacaaagtggccaaatatgagaaagcatgttctgacaatcaacatgcttttataccatttgtttttgacactt 23485006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 604 - 690
Target Start/End: Complemental strand, 28225125 - 28225038
Alignment:
Q  604 taaaagttgcgtcaagcaaagtggctaa-tatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||| |||||||||||||||| | || ||||| ||||||| || |||||||||||||||||||||| |||||   |||||||||||    
T  28225125 taaaagctgcgtcaagcaaagtgaccaaatatgagaaagcgtattctgacaatcaacatgcttttataccatttgcttttgacacttt 28225038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 604 - 690
Target Start/End: Original strand, 41867890 - 41867977
Alignment:
Q  604 taaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||| ||||||||||||||||| | || |||| ||||| |||| |||||||||||||||||||||| |||||   |||||||||||    
T  41867890 taaaagctgcgtcaagcaaagtggtcaaacatgagaaagcatgttctgacaatcaacatgcttttataccatttgcttttgacacttt 41867977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 616 - 692
Target Start/End: Original strand, 33612542 - 33612618
Alignment:
Q  616 caagcaaagtggctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    |||||||| |||  || |||| ||| ||||||||||||||||||||| |||||||  |||| |||||||||||||||    
T  33612542 caagcaaaatggtaaacatgagaaaacgtgttttgacaatcaacatgattttatacaatttgtatttgacacttttg 33612618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 602 - 692
Target Start/End: Complemental strand, 2888643 - 2888552
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    ||||||||||||||| |||||||||| | || |||| ||| |||||| |||||||||||||| ||||||| ||||  | | |||||||||||    
T  2888643 cctaaaagttgcgtctagcaaagtggacaaacatgagaaaacgtgttctgacaatcaacatgtttttataccattcgtttatgacacttttg 2888552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 602 - 690
Target Start/End: Original strand, 19161763 - 19161852
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||  ||||||||| ||||||| | || |||| |||||||||| |||||||||||||| ||||||| |||||   |||||||||||    
T  19161763 cctaaaatctgcgtcaagaaaagtgggcaaacatgaaaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacacttt 19161852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 695
Target Start/End: Complemental strand, 27502489 - 27502395
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    |||||||| ||||||||||||||||| | || |||| ||| ||||||  ||||| |||||||||||||||  |||  | ||||||||||| ||||    
T  27502489 cctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgttccgacaaacaacatgcttttatacaattgctttttgacactttcgact 27502395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 615 - 695
Target Start/End: Original strand, 3968402 - 3968483
Alignment:
Q  615 tcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    ||||||||||||| | ||||||| ||| | ||||||||||||||| |||||||||||  ||||   ||||||| ||||||||    
T  3968402 tcaagcaaagtggtcaaatatgagaaaacatgttttgacaatcaatatgcttttatacaatttgcgtttgacatttttgact 3968483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 642 - 690
Target Start/End: Complemental strand, 17344724 - 17344676
Alignment:
Q  642 cgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||| |||||||||||||||||||| |||||   |||||||||||    
T  17344724 cgtgttttcacaatcaacatgcttttataccatttgcttttgacacttt 17344676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 650 - 690
Target Start/End: Original strand, 32029115 - 32029155
Alignment:
Q  650 gacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    ||||||||||||||||| ||||||||| | |||||||||||    
T  32029115 gacaatcaacatgctttcatatcatttgtttttgacacttt 32029155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 602 - 690
Target Start/End: Complemental strand, 6461 - 6372
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttt 690  Q
    |||||||||||||||||| |||||||| ||  |||| |||||||||| ||||||||||||||||| |||| |||||   |||||||||||    
T  6461 cctaaaagttgcgtcaagtaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttctataccatttgcttttgacacttt 6372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 606 - 686
Target Start/End: Complemental strand, 33373 - 33292
Alignment:
Q  606 aaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgaca 686  Q
    ||||| || |||||||||||||||||  |||| |||||||||| |||||||||||||| ||||||| ||||||  |||||||    
T  33373 aaagtggcatcaagcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttacttttgaca 33292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 695
Target Start/End: Complemental strand, 49538 - 49444
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtgg-ctaatatgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttgact 695  Q
    |||||||||||| |||| |||||||| | ||| ||| ||| |||||| ||||||||||| |||||||||| |||||   ||||||||||| ||||    
T  49538 cctaaaagttgcatcaaacaaagtggtcaaatgtgagaaatcgtgttctgacaatcaacgtgcttttataccatttgcttttgacactttcgact 49444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 692
Target Start/End: Original strand, 164 - 255
Alignment:
Q  602 cctaaaagttgcgtcaagcaaagtggctaat-atgataaagcgtgttttgacaatcaacatgcttttatatcatttatatttgacacttttg 692  Q
    |||||||  |||||||||||||||||| ||  |||| | || | ||| |||| ||||||||||||||||| ||||| | |||||||||||||    
T  164 cctaaaaactgcgtcaagcaaagtggccaaacatgagacagtgggttatgaccatcaacatgcttttataccatttgtgtttgacacttttg 255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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