View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-12 (Length: 603)
Name: NF3060-Insertion-12
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 8 - 582
Target Start/End: Original strand, 48107900 - 48108475
Alignment:
| Q |
8 |
acctcaatagtagcaaaataatcgtagtccaaagaatgaacgcctagccctgcatatatggtgtgaagatatatatgttagatattaaaagaattgtagc |
107 |
Q |
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| T |
48107900 |
acctcaatagtagcaaaataatcatagtccaaagaatgaacgcctagccctgcatatatggtgtgaagatatatatgttagatattaaaagaatagtagc |
48107999 |
T |
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| Q |
108 |
actgaattatagag--agggagagattgaaacctgagataaataaaaggaaagaggtggtgatgaacaacaaattgcagcattttgcagtaaccttcatt |
205 |
Q |
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| T |
48108000 |
actgaattatagagagagggagagattgaaacctgagataaataaaaggaaagaggtggtgatgaacaacaaattgcagcattttgcagtaaccttcatt |
48108099 |
T |
|
| Q |
206 |
ttagcgctaatcatcattatataaaataaaaacgtcccttatacaatgaaccctatagggattaactggctatttataagcccgtgcattgcctgtgagc |
305 |
Q |
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| T |
48108100 |
ttagcactaatcatcattatataaagtaaaaacgtcccttatacaatgaa-cctatagggattaactggctatttataagcccgtgcattgcctgtgagc |
48108198 |
T |
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| Q |
306 |
tttgaaaattcggcttaaaannnnnnnaagnnnnnnntggttgataaaattggatagcaatagtaagaaataaagaatgagagatttcgnnnnnnncttc |
405 |
Q |
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| T |
48108199 |
tttgaaaattcggtttaaaaattttttaagaaaaaaatggttgataaaattggatagcaatagtaagaaataaagaatgagagattttgtttttttcttc |
48108298 |
T |
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| Q |
406 |
cttataatctattatagaatttaaatattttgttttgttatttaaaaagtgcaatcatatcgtaaaatctaactcaaccgactatactaatattgttaga |
505 |
Q |
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| T |
48108299 |
cttataatctattatagaatttaaatattttgttttgttatttaaaaagtgcaatcatatcctaaaatctaactcaaccgactatactaatattgttaga |
48108398 |
T |
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| Q |
506 |
atgaatattttttgtagcgtcacacattatccaaaagttttaacttttgtggtgtttatcattttgtttacaacaag |
582 |
Q |
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| T |
48108399 |
atgaatattatttgtagcgtcacacattatccaaaagttttaacttttgtggtgtttatcattttatttacaacaag |
48108475 |
T |
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