View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-13 (Length: 624)
Name: NF3060-Insertion-13
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-13 |
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Alignment Details
Target: chr1 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 8 - 608
Target Start/End: Complemental strand, 39567841 - 39567241
Alignment:
| Q |
8 |
aaaccatggctctccgtaattcgtccgattcgttacatgcttcgtgaacaacgactcgttttcgtcttgatcggaatcgtcatcgcatccgtattcttca |
107 |
Q |
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| T |
39567841 |
aaaccatggctctccgtaattcgtccgattcgttacatgcttcgtgaacaacgactcgttttcgtcttgatcggaatcgtcatcgcatccgtattcttca |
39567742 |
T |
|
| Q |
108 |
caatcataccttcatcttcaacttcttcatcctcctcattctcaacccgtccatacgaatcagactcgatctcgtacttcgaccgcgagtcaaagaccac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39567741 |
caatcataccttcatcttcaacttcttcatcctcctcattctcaacccgtccatacgaatcagactcgatctcgtacttcgaccgcgagtcaaagaccac |
39567642 |
T |
|
| Q |
208 |
acctgcagtgtataagcaacgcgccgcctcggtggttcattcgtccgggaagattccgttggggataaagaggaaggggctgcggatcgtggtgactggt |
307 |
Q |
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| T |
39567641 |
acctgcagtgtataagcaacgcgccgcctcggtggttcattcgtccgggaagattccgttggggataaaaaggaaggggctgcggatcgtggtgactggt |
39567542 |
T |
|
| Q |
308 |
ggagcgggattcgttgggtcccatctagtggatcggttgatggcgagaggggatagtgtgattgttgttgataatttcttcactggtagaaaagagaacg |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39567541 |
ggagcgggattcgttgggtcccatctagtggatcggttgatggcgagaggggatagtgtgattgttgttgataatttcttcaccggtagaaaagagaacg |
39567442 |
T |
|
| Q |
408 |
ttatgcatcattttggtaatccgagatttgagcttattcgacacgacgtcgttgagcctcttcttcttgaagttgatcggatctatcatcttgcttgtcc |
507 |
Q |
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| T |
39567441 |
ttatgcatcattttggtaatccgagatttgagcttattcgacacgacgtcgttgagcctcttcttcttgaagttgatcagatctatcatcttgcttgtcc |
39567342 |
T |
|
| Q |
508 |
tgcttctcctgttcattacaagttcaaccccgtcaaaactatcatatcctttttcattatttctttatctctgactccgttatctgagtttatagtttat |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39567341 |
tgcttctcctgttcattacaagttcaaccccgtcaaaactatcatatcctttttcattatttctttatctctgactccgttatctgagtttatagtttat |
39567242 |
T |
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| Q |
608 |
t |
608 |
Q |
| |
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| |
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| T |
39567241 |
t |
39567241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 473 - 561
Target Start/End: Original strand, 29127122 - 29127210
Alignment:
| Q |
473 |
cttgaagttgatcggatctatcatcttgcttgtcctgcttctcctgttcattacaagttcaaccccgtcaaaactatcatatccttttt |
561 |
Q |
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| T |
29127122 |
cttgaggttgatcagatctatcatcttgcctgtcctgcttcacctgttcattataagtataaccctatcaagacaatcatatccttttt |
29127210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 329 - 562
Target Start/End: Original strand, 49755749 - 49755982
Alignment:
| Q |
329 |
catctagtggatcggttgatggcgagaggggatagtgtgattgttgttgataatttcttcactggtagaaaagagaacgttatgcatcattttggtaatc |
428 |
Q |
| |
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||||| |||||||| ||||| | ||||| |||| |||||| || ||||||||| || ||||| || |||||||| ||| | |||||| ||||||||| |
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| T |
49755749 |
catcttgtggatcgtttgattgaaagaggtgataatgtgatcgtgattgataattattttactggaaggaaagagaatgttgttcatcatattggtaatc |
49755848 |
T |
|
| Q |
429 |
cgagatttgagcttattcgacacgacgtcgttgagcctcttcttcttgaagttgatcggatctatcatcttgcttgtcctgcttctcctgttcattacaa |
528 |
Q |
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| T |
49755849 |
ccaattttgaacttattagacatgatgttgttgaacctattcttcttgaagttgatcagatctatcacttggcttgccctgcttcccctgttcattacaa |
49755948 |
T |
|
| Q |
529 |
gttcaaccccgtcaaaactatcatatcctttttc |
562 |
Q |
| |
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||| || || ||||| || ||||||||||||||| |
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| T |
49755949 |
gtttaatcctgtcaagaccatcatatcctttttc |
49755982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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