View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-14 (Length: 583)
Name: NF3060-Insertion-14
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 190 - 583
Target Start/End: Complemental strand, 41126378 - 41125985
Alignment:
| Q |
190 |
gtagagaacaacgctttattgagatgaaaaggaaattcacgacattaagggatgaaactgaatctgaaatcgagtttcagtctttgtatgtaaccaatta |
289 |
Q |
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| T |
41126378 |
gtagagaacaacgctttattgagatgaaaaggaaattcacgacattaagggatgaaactgaatctgaaatcgagtttcagtctttgtatgtaaccaatta |
41126279 |
T |
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| Q |
290 |
tcatctcgaagataacgatggcgaacccgtgtgtttctctgttctaccgtttaaatggggcgcttctaaggtttccaaagttgatgataccgaaaagggg |
389 |
Q |
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| T |
41126278 |
tcatctcgaagataacgatggcgaacccgtgtgtttctctgttctaccgtttaaatggggcgcttctaaggtttccaaagttgatgataccgaaaagggg |
41126179 |
T |
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| Q |
390 |
ttgaagatatttttgcatggatctgctgacaatgggttgcagacgattttcatggaggttactgcatggaagtttgatctaactggtttgaaacctgagg |
489 |
Q |
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| T |
41126178 |
ttgaagatatttttgcatggatctgctgacaatgggttgcagacaattttcatggaggttactgcatggaagtttgatctaactggtttgaaacctgagg |
41126079 |
T |
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| Q |
490 |
tatcgttgttgtcgaaggataaaagatggatcaagcttcaaaagccgaggaaaagctttcagaaaactgtgaaaaatgctttgattactctcta |
583 |
Q |
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| T |
41126078 |
tatcgttgttgtcgaaggataaaagatggatcaagcttcaaaagccgaggaaaagctttcagaaaactgtgaaaaatgctttgattactctcta |
41125985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 41126467 - 41126427
Alignment:
| Q |
101 |
gctggttcctattttagaaattagggttctacttatctccg |
141 |
Q |
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| T |
41126467 |
gctggttcctattttagaaattagggttctacttatctccg |
41126427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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