View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-15 (Length: 577)
Name: NF3060-Insertion-15
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 8 - 577
Target Start/End: Original strand, 32667441 - 32668014
Alignment:
| Q |
8 |
gatattgctagctgcacactttcaataagttatgtgccaaattgtggtcgcggtgatgataattttcgtgtcatgattcttcgcacaaaagaaaatcacg |
107 |
Q |
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| T |
32667441 |
gatattgctagctgcacactttcaataagttatgtgctaaattgtggtcgcggttatgatagttttcgtgtcatgattcttcgcacaaaagaaaatcacg |
32667540 |
T |
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| Q |
108 |
gtcaaatatgattgatacaacct----caattgtagttacatgtcaagtggtagcgctctgatcacgatcgtaaataannnnnnnatttatacactaaat |
203 |
Q |
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| T |
32667541 |
gtcaaatatggttgatacaacctacctcaattgtggttacatgtcaagtggcagcgctctgatcacgatcataaataatttttttatttatacactaaat |
32667640 |
T |
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| Q |
204 |
gtgcagcccatggactggcttataattttgtgctatggctaattgctaatgaaggaaatgggaatatattgttaaatatatgagtagaatatgtacaaga |
303 |
Q |
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| T |
32667641 |
gtgcagcccatggactggcttataattttgtgctatggctaattgctaatgaaggaaataggaatatattgttaaatatatgagtagataatgtacaaga |
32667740 |
T |
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| Q |
304 |
ggctaatttgcattataacatggaagtttcaaatttgtgtgcttgtggattgtatttattgaaggaaacgtgagaattggggtggaaaattttgttgtta |
403 |
Q |
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| T |
32667741 |
ggctaatttgcattgtagcatggaagtttcaaatttgtgtgcttgtggattgtatttattgaaggaaacgtgagaattggggtggaaaattttgttgtta |
32667840 |
T |
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| Q |
404 |
gtgacaaacgacttagctataaggttggtacaaaatgttgttgtgtaataattttggggagaaccaattgggttttagtcaaacttatgagtgtacgcgt |
503 |
Q |
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| T |
32667841 |
gtgacaaacgacttagctataaggttggtacaaaatgttgttgtgtaataattttggggagaaccaattgggttttagtcaaacttatgagtgtacgcgt |
32667940 |
T |
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| Q |
504 |
tattccactaaagatgcgaatcaatttcatctcattgtacattttaaacccattatattacattattatgatag |
577 |
Q |
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| T |
32667941 |
tattccactaaagatgcgaatcaatttcatctcattgtacattttaaacccattatattacattattatgatag |
32668014 |
T |
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