View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-16 (Length: 405)
Name: NF3060-Insertion-16
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-16 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 29259891 - 29259700
Alignment:
| Q |
15 |
gtctgaaaagaataaggtagtaagtcacaagtcacaagtgatgacattctctataaaaacaaaagaaattaatagatccgtaattattagactaattaag |
114 |
Q |
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| T |
29259891 |
gtctgaaaagaataaggtagtaagtcacaagtcacaagtgatgacattctctataaaaacaaaagaaattaatagatccgtaattattagactaattaag |
29259792 |
T |
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| Q |
115 |
gg-nnnnnnntggttgaagattgagcaagacgaattacctgaagaagctggaggtttgtcagttgtcttaacagttcgatacatctgtgaag |
205 |
Q |
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| T |
29259791 |
ggaaaaaaaatggttgaagattgagcaatacgaattacctgaagaagctgcaggtttgtcagttgtcttaacagttcgatacatctgtgaag |
29259700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 29259553 - 29259478
Alignment:
| Q |
321 |
tttggattaatcacgaggttgatgtttgataataaggttgtaattggagattgttgcattattggaaaatgatgac |
396 |
Q |
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| T |
29259553 |
tttgcattaatcacgaggttgatgtttgataataaggttgtaattggagattgttgcattattggaaaatgatgac |
29259478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 29259674 - 29259637
Alignment:
| Q |
231 |
ttttatactaattacaaagatacttccacaatttcaac |
268 |
Q |
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| T |
29259674 |
ttttatactaattacaaagatacttccgcaatttcaac |
29259637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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