View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-17 (Length: 430)
Name: NF3060-Insertion-17
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-17 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 7 - 428
Target Start/End: Original strand, 21376611 - 21377032
Alignment:
| Q |
7 |
aagtgggatactcttggtgtgtcgggtccgtttcttcatccttttggtttactcgaaggagcttttttggtgttcttgggtctcttgtcccttatattga |
106 |
Q |
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| T |
21376611 |
aagtgggatactcttggtgtgtcgggtccgtttcttcatccttttggtttactcgaaggagcttttttggtgttcttgggtctcttgtcccttatattga |
21376710 |
T |
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| Q |
107 |
catacatgacttgcatctaaccgtaaaagatgtgctcacttctaatgatccccacacgaatattctgccatctaatacaatttatgatcacataaacctc |
206 |
Q |
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| T |
21376711 |
catacatgacttgcatctaaccgtaaaagatgtgctcacttctaatgatccccacacgaatattctgctatctaatacaatttatgatcacataaacctc |
21376810 |
T |
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| Q |
207 |
actcacatgaatttcaatgataccgaggaagatccagttctatggaacaaccaaaagaatggtattcatactccaaaaagcggttacatctggcttctca |
306 |
Q |
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| T |
21376811 |
actcacatgaatttcaatgataccgaggaagatccagttctatggaacaaccaaaagaatggtattcatactccaaaaagcggttacatctggcttctca |
21376910 |
T |
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| Q |
307 |
ataattccgatagagttgatcaaaccaacaccttcactcttcgatttggatttggaagttttgtcttcccgaaaaatataaatttcttttttggctgact |
406 |
Q |
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| T |
21376911 |
ataattccgacagagttgatcaaaccaacaccttcactctttgatttggatttggaagttttgtcttcccgaaaaatataaatttcttttttggctgact |
21377010 |
T |
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| Q |
407 |
tgtaacaatccggttcctacct |
428 |
Q |
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| T |
21377011 |
tgtaacaatccggttcctacct |
21377032 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 9535735 - 9535824
Alignment:
| Q |
83 |
tgggtctcttgtcccttatattgacatacatgacttgcatctaaccgtaaaagatgtgctcacttctaatgatccccacacgaatattct |
172 |
Q |
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|||||||||||||||||||||||| || ||||||||||| || || || |||||||| ||| || | |||||||| || || |||||||| |
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| T |
9535735 |
tgggtctcttgtcccttatattgatatccatgacttgcagctcactgttaaagatgttctctctgcaaatgatccgcagacaaatattct |
9535824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 25122032 - 25121974
Alignment:
| Q |
249 |
tggaacaaccaaaagaatggtattcatactccaaaaagcggttacatctggcttctcaa |
307 |
Q |
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| T |
25122032 |
tggaacaaccaaaagaatggcacttattctcaaaaaagtggttacaactggcttctcaa |
25121974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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