View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-18 (Length: 460)
Name: NF3060-Insertion-18
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-18 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 39231568 - 39231366
Alignment:
| Q |
7 |
attttcattggatgacagtgtaaaagtatttacaccgacagtgcttactctttaaatccnnnnnnnnnnnnnnnntcagacattataaaactcatcatag |
106 |
Q |
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| T |
39231568 |
attttcattggatgacagtgtaaaagtatttacacctacagttcttactctttaaatccaaaaaataataaaaaatcagacattataaaactcatcattg |
39231469 |
T |
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| Q |
107 |
gtgcaattcaacttaacatatatcattgttctttcattgaacatctaaaataataactaattagatagataaataaactttagaataaaatcaacagttc |
206 |
Q |
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| T |
39231468 |
gtgcaattcaacttaacatatatcattgttctctcattgaacatctaaaataataactaattagatagataaataaactttagaataaaatcaacagttc |
39231369 |
T |
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| Q |
207 |
tct |
209 |
Q |
| |
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||| |
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| T |
39231368 |
tct |
39231366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 39231308 - 39231228
Alignment:
| Q |
271 |
cctttttgagagcacttggtgttacagagagcacattcagaacgaatcgaagtactatccgccaaacaggaactgtcaatt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39231308 |
cctttttgagagcacttggtgttacagagagcacattcagaacgaatcgaagtactatccgccaaacaggaactgtcaatt |
39231228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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