View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-19 (Length: 312)
Name: NF3060-Insertion-19
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-19 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 3 - 312
Target Start/End: Original strand, 24210906 - 24211215
Alignment:
| Q |
3 |
caacaattcttactttctaataggtaaacatgttttatcggccatcgcttgaactccaacaacactttcgtgttccccatctttctaagatatgaaacaa |
102 |
Q |
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| T |
24210906 |
caacaattcttaatttctaataggtaaacatgttttatcggccatcgcttgaactccaacaacactttcgtgttccccatctttctaagatatgaaacaa |
24211005 |
T |
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| Q |
103 |
gttttcagacactgtttgggaccaaccaccacaccagagttttccaatacttacttaccattcatttgatttcatcaaataaccacacaacttaaatgaa |
202 |
Q |
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| T |
24211006 |
gttttcagacactatttgggaccaaccaccacaccagagttttccaatactcacttaccattcatttgatttcatcaaataaccacacaacttaaatgaa |
24211105 |
T |
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| Q |
203 |
cattcacatttccttaacccattactgtcttctcgcttcaatttcttcttggttccatggtacataccacccatttcacaccccaagattaacttttgtg |
302 |
Q |
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| T |
24211106 |
cattcacattttcttaacccattattgtcttctcgcttcaatttcttcttggttccatggtacataccacccatttcacaccccaagattaacttttgtg |
24211205 |
T |
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| Q |
303 |
gtcttcgtcc |
312 |
Q |
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||||| |||| |
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| T |
24211206 |
gtctttgtcc |
24211215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 312
Target Start/End: Original strand, 24205747 - 24205913
Alignment:
| Q |
147 |
caatacttacttaccattcatttgatttcatcaaataaccacacaacttaaatgaacattcacatttccttaacccattactgtcttctcgcttcaattt |
246 |
Q |
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| T |
24205747 |
caatactcactgaccaatcatttgatttcaaaaaataaaaacataacctaaatgaacatgcacatttctttaatgatgtgtcttcttctcacatcaattt |
24205846 |
T |
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| Q |
247 |
cttcttggttccatggtacataccacccatttcaca-ccccaagattaacttttgtggtcttcgtcc |
312 |
Q |
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| T |
24205847 |
cttcttggttccatggtacaaaccacccatttcatacccccaagattaacttatgtggtcttcgtcc |
24205913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 282
Target Start/End: Complemental strand, 55974315 - 55974200
Alignment:
| Q |
161 |
cattcatttgatttcatcaaataaccacacaacttaaatgaacattcacatttccttaacccattactgtcttctcgcttcaatttcttcttggttccat |
260 |
Q |
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| T |
55974315 |
cattcatttgatttcaacaaataaccacataacctaaatgagcattcacagttccttga-ccat-----gcgtcttgcttcacgttcttcttgtttcctt |
55974222 |
T |
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| Q |
261 |
ggtacataccacccatttcaca |
282 |
Q |
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| T |
55974221 |
ggtacagaccacccatttcaca |
55974200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 55981375 - 55981323
Alignment:
| Q |
161 |
cattcatttgatttcatcaaataaccacacaacttaaatgaacattcacatttc |
214 |
Q |
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| T |
55981375 |
cattcatttgatttcaacaaataacctca-aacataaacgaacattcacatttc |
55981323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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