View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-20 (Length: 389)
Name: NF3060-Insertion-20
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 389
Target Start/End: Original strand, 51446308 - 51446685
Alignment:
| Q |
21 |
cattattattatttccaaataattaatcaaccaagaatttcttgcttaagcaagggcacatagag--tgtggatgaattatttcataacataaatgtaaa |
118 |
Q |
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| T |
51446308 |
cattattattatttccaaataattaatcaaccaagaatgtcttgcttaagcaagcgcacatagagagtgtggatgaattattttataacataaatgtaaa |
51446407 |
T |
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| Q |
119 |
gcagatggtgtcgtcatttactctttcaacttaatgtttaaaattgaaggattcggagaaaacgagggnnnnnnnctttaaaact--taaatgagagtaa |
216 |
Q |
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| T |
51446408 |
gcagatggtgtcgtcatttactctttcaacttaatgtttaaaattgaaggattcggagaaaacgagggaaaaaaactttaaaacttataaatgagagtaa |
51446507 |
T |
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| Q |
217 |
gatagggtcacatgtgtgtgatcgttagcttgattgatgggagtttgggttagacacatgacaacgcacgcagtaataattttgaca---------cttg |
307 |
Q |
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| T |
51446508 |
gatagggtcacatgtgtgtgatcgtgagcttgattgatgggagtttgggtttgacacatga----tgatgcagtaataattttgacatttttgtcggttg |
51446603 |
T |
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| Q |
308 |
ggataatatttttagacatttgttaagttgttatgatgaagggattcattagtggtagaaattaagctacatgtctttttca |
389 |
Q |
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| T |
51446604 |
ggataatttttttagacattagttaagttgttatgatgaagggattcattagtggtagaaattaagctacatgtctttttca |
51446685 |
T |
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