View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3060-Insertion-21 (Length: 286)

Name: NF3060-Insertion-21
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3060-Insertion-21
NF3060-Insertion-21
[»] scaffold0627 (1 HSPs)
scaffold0627 (176-286)||(5759-5869)
[»] chr6 (2 HSPs)
chr6 (175-275)||(16717486-16717586)
chr6 (49-111)||(16717698-16717759)
[»] chr5 (6 HSPs)
chr5 (172-271)||(8546979-8547078)
chr5 (172-271)||(8638050-8638149)
chr5 (173-265)||(8536669-8536761)
chr5 (228-272)||(9004532-9004576)
chr5 (172-253)||(8645395-8645479)
chr5 (172-253)||(8678903-8678984)
[»] chr1 (1 HSPs)
chr1 (212-277)||(5131660-5131725)


Alignment Details
Target: scaffold0627 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 176 - 286
Target Start/End: Complemental strand, 5869 - 5759
Alignment:
Q  176 agccatgaaaagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatgt 275  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5869 agccatgaaaagaaaagagggttcaattacccctattagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatgt 5770  T
Q  276 tgttattttga 286  Q
    |||||||||||    
T  5769 tgttattttga 5759  T

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Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 16717586 - 16717486
Alignment:
Q  175 tagccatgaaaagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatg 274  Q
    ||||||||||||||||| |||||||||| | ||| || |||||||||| |||||||||||||  |||| ||| ||||||||||||||||||| |||||||    
T  16717586 tagccatgaaaagaaaaaagggttcaatcacccccgtaagggctagccaaagatgcaataaaagaaaatggagagttgaggaggcagaaagtgatgaatg 16717487  T
Q  275 t 275  Q
    |    
T  16717486 t 16717486  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 16717759 - 16717698
Alignment:
Q  49 ctcaataattctcatgttttcttttactgttagctt-tagtaagtatttaatatgaattgaata 111  Q
    |||||||||||||||||||  |||||| |||||||| || | ||| ||||||||||||||||||    
T  16717759 ctcaataattctcatgttt--ttttacggttagcttctaattagtctttaatatgaattgaata 16717698  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 271
Target Start/End: Original strand, 8546979 - 8547078
Alignment:
Q  172 gtgtagccatgaaaagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatga 271  Q
    |||||||||||||||||||| ||| |||||||  |||||||||||||||  ||||||||||||||| |||||| |||||||| |||||||| | ||||||    
T  8546979 gtgtagccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagatgcaataaagaaaaaggaaaagttgatgaggcagacaatcatga 8547078  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 8638149 - 8638050
Alignment:
Q  172 gtgtagccatgaaaagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatga 271  Q
    |||||||||||||||||||| |||||||||| |  | || ||||||||||| ||||||||||||||||||||||| |||||| ||  |||||||||||||    
T  8638149 gtgtagccatgaaaagaaaaaagggttcaataactcttgctagggctagcctaagatgcaataaagcaaaagggagagttgatgaatcagaaagtcatga 8638050  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 8536761 - 8536669
Alignment:
Q  173 tgtagccatgaaaagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaag 265  Q
    ||||| ||||||||||||| | |||||||||  ||||| ||||||| ||| |||| |||||||| |||||||||||||||| |||||||||||    
T  8536761 tgtagtcatgaaaagaaaaaaaggttcaattgcccctgctagggctggccaaagacgcaataaatcaaaagggaaagttgatgaggcagaaag 8536669  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 9004576 - 9004532
Alignment:
Q  228 tgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaa 272  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  9004576 tgcaataaagcaaaagggaaagttgatgaggcagaaagtcatgaa 9004532  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 8645479 - 8645395
Alignment:
Q  172 gtgtagccatgaaaagaaaagagggttcaattatccctgttagggctagcc---gaagatgcaataaagcaaaagggaaagttga 253  Q
    |||||||||||||||||||| | |||||||| |  |||| |||||||||||   ||||| |||||||||||||||||| ||||||    
T  8645479 gtgtagccatgaaaagaaaaaacggttcaataactcctgctagggctagcctaagaagaagcaataaagcaaaagggagagttga 8645395  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 8678984 - 8678903
Alignment:
Q  172 gtgtagccatgaaaagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttga 253  Q
    |||||||||||||||| ||| |||||||||| |  |||   |||||||||| |||| |||||||||||||||||| ||||||    
T  8678984 gtgtagccatgaaaaggaaaaagggttcaataactcctaccagggctagcctaagaagcaataaagcaaaagggagagttga 8678903  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 5131725 - 5131660
Alignment:
Q  212 tagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatgttg 277  Q
    ||||||||||| |||| ||||| ||||||||||||||| ||| | |||| ||||| ||| ||||||    
T  5131725 tagggctagccaaagaggcaatgaagcaaaagggaaagatgaaggggcaaaaagtaatgcatgttg 5131660  T

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