View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-22 (Length: 239)
Name: NF3060-Insertion-22
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-22 |
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| [»] chr1 (10 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 2176761 - 2176530
Alignment:
| Q |
8 |
agtttaccaatgtaagataaatttacctgttcttgaacttcctctgatatatcaagtttgttgtatgaaatatcactcaaagaacatgctctaaaccttg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2176761 |
agtttaccaatgtaagataaatttacctgttcttgaacttcctctgatatatcaagtttgttgtatgaaatatcactcaaagaacatgctccaaaccttg |
2176662 |
T |
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| Q |
108 |
atctatacaattggtttcatgaaatgcttgtttaaaatggcaaaaggttcttcactgttgagcgtagagttatgtacatgttgtaagagcatttaatttc |
207 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176661 |
atccatacaattggtttcatgaaatgcttgtttaaaatggcaaaaggttcttcactgttgagcgtagagttatgtacatgttgtaagagcatttaatttc |
2176562 |
T |
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| Q |
208 |
agatgccgtatgaaatgaaactggagtcatgt |
239 |
Q |
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| T |
2176561 |
agatgccatatgaaatgaaactggagtcatgt |
2176530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 42421622 - 42421685
Alignment:
| Q |
24 |
ataaatttacctgttcttgaacttcctctgatatatcaagtttgttgtatgaaatatcactcaa |
87 |
Q |
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| T |
42421622 |
ataaaattacctgttcttgaacttcctctgatatctcaagtttgttgtatgaaatatcactcaa |
42421685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 42202742 - 42202663
Alignment:
| Q |
8 |
agtttaccaatgtaagataaatttacctgttcttgaacttcctctgatatatcaagtttgttgtatgaaatatcactcaa |
87 |
Q |
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| T |
42202742 |
agtttatcaatgtaagataaatttaactgttctttaacttcctctgacatctcaagtttattgtatgaaatatcattcaa |
42202663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 42211610 - 42211531
Alignment:
| Q |
8 |
agtttaccaatgtaagataaatttacctgttcttgaacttcctctgatatatcaagtttgttgtatgaaatatcactcaa |
87 |
Q |
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| T |
42211610 |
agtttatcaatgtaagataaatttaactgttctttaacttcctctgacatctcaagtttattgtatgaaatatcattcaa |
42211531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 42409321 - 42409400
Alignment:
| Q |
8 |
agtttaccaatgtaagataaatttacctgttcttgaacttcctctgatatatcaagtttgttgtatgaaatatcactcaa |
87 |
Q |
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| T |
42409321 |
agtttaccaatgtaatataaactaacctgttcttgaacttccttcgatatctcaagtttggtgtatgaaatatcactcaa |
42409400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 42217566 - 42217496
Alignment:
| Q |
8 |
agtttaccaatgtaagataaatttacctgttcttgaactt-cctctgatatatcaagtttgttgtatgaaa |
77 |
Q |
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| T |
42217566 |
agtttagcaatgtaagataaatttaaccatttttgaactttcctctgacatctcaagtttgttgtatgaaa |
42217496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 42417482 - 42417521
Alignment:
| Q |
105 |
ttgatctatacaattggtttcatgaaatgcttgtttaaaa |
144 |
Q |
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| T |
42417482 |
ttgatccatgcaattggtttcatgaaatgcttgtttaaaa |
42417521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 42217471 - 42217437
Alignment:
| Q |
116 |
aattggtttcatgaaatgcttgtttaaaatggcaa |
150 |
Q |
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| T |
42217471 |
aattgatttcatgaaatgcttgtttaaaatggcaa |
42217437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 42202647 - 42202619
Alignment:
| Q |
116 |
aattggtttcatgaaatgcttgtttaaaa |
144 |
Q |
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| T |
42202647 |
aattggtttcatgaaatgcttgtttaaaa |
42202619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 42211515 - 42211487
Alignment:
| Q |
116 |
aattggtttcatgaaatgcttgtttaaaa |
144 |
Q |
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| T |
42211515 |
aattggtttcatgaaatgcttgtttaaaa |
42211487 |
T |
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