View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-24 (Length: 236)
Name: NF3060-Insertion-24
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-24 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 51037414 - 51037185
Alignment:
| Q |
7 |
agtatgattagtattgtatctaatatctagagaataattatatttattgattttgagcgaaggtgatcaaggatggctgcctgtattgattttgagcttg |
106 |
Q |
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| T |
51037414 |
agtatgattagtattgtatctaatatctagagaataattatatttattgattttgagcgaaggtgatcaaggatggctgcctgtattgattttgagcttg |
51037315 |
T |
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| Q |
107 |
aaggaaagcgataagcagacaagaagacctgcagttgttttccttcacagtacaaattcgcataaagaatctctgcgtccattgcttgaggttattatac |
206 |
Q |
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| T |
51037314 |
aaggaaagcgataagcagacaagaagacctgcagttgttttccttcacagtacaaattcgcataaagaatctctgcgtccattgcttgaggttattatac |
51037215 |
T |
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| Q |
207 |
cgcattttcactgcttcactcattgctcat |
236 |
Q |
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| T |
51037214 |
cgcattttcactgcttcactcattgctcat |
51037185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 51045256 - 51045122
Alignment:
| Q |
65 |
gaaggtgatcaaggatggctgcctgtattgattttgagcttgaaggaaagcgataagcagacaagaagacctgcagttgttttccttcacagtacaaatt |
164 |
Q |
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| T |
51045256 |
gaaggagatcaaggacggttgcctgtgttgattttgagcttgaaggaaagcgataagcagacaagaagacctgcagttgttttccttcacagtacaaaca |
51045157 |
T |
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| Q |
165 |
cgcataaagaatctctgcgtccattgcttgaggtt |
199 |
Q |
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| T |
51045156 |
agtataaagaatatctgcgtccgttgcttgaggtt |
51045122 |
T |
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