View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-25 (Length: 248)
Name: NF3060-Insertion-25
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-25 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 87 - 246
Target Start/End: Complemental strand, 42243233 - 42243075
Alignment:
| Q |
87 |
tcatcaccatcaccatctatctaaaaaggagatctgaagactgaatttcatcatcataactatcttgnnnnnnnatttccgtagattgattcttgttctt |
186 |
Q |
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| T |
42243233 |
tcatcaccatcaccatctatctaaaaaggagatctgaagactgaatttcatcatcataactatcttgtttttttatttccgtagattgattcttgttctt |
42243134 |
T |
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| Q |
187 |
cttctatttagatctagaatttttatgtatctattgatgaatgtttttatcttccatcgt |
246 |
Q |
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| T |
42243133 |
cttctatttagatctagaa-ttttatgtatctattgatgaatgtttttatcttccatcgt |
42243075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 42246545 - 42246465
Alignment:
| Q |
9 |
ttataagtacgaagtttcgactgccacttacaaataattattttttgtcgatacgcaagagtcggtgatcaaatcctctca |
89 |
Q |
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| T |
42246545 |
ttataagtacgaagtttcgactgccgcttacaaataattattttttgtcgatacgcaagagtcggtgatcaaatcctctca |
42246465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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