View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-26 (Length: 209)
Name: NF3060-Insertion-26
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-26 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 28606613 - 28606805
Alignment:
| Q |
8 |
aaagcaacctgagctatgctttctatgtgctcaaaaaactcaatcttagcattttcattctcaggaagatagtatccatatacataagcccatttgagaa |
107 |
Q |
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| T |
28606613 |
aaagcaacctgagctatgctttctatgtgctcaaaaaactcaatcttagcattttcattctcaggaagatagtatccatatacataagcccatttgagaa |
28606712 |
T |
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| Q |
108 |
ctcttctacattcaaccaattgtttcaatgcatcctttatgaaatcaaaataagtttctgactttacccatgatataccaactctctttatat |
200 |
Q |
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| T |
28606713 |
ctcttctacattcaaccaattgtttcaatgcatcctttatgaaatcaaaataagtttctgactttacccatgatataccaactctctttatat |
28606805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 28603428 - 28603562
Alignment:
| Q |
12 |
caacctgagctatgctttctatgtgctcaaaaaactcaatcttagcattttcattctcaggaagatagtatccatatacataagcccatttgagaactct |
111 |
Q |
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|||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |||||| ||| |
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| T |
28603428 |
caacttgagctatgctttggatgtgatcaaaaaactcaatcttagcattttcatcctcgggaagatagtatccatatacataactccatctgagaattct |
28603527 |
T |
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| Q |
112 |
tctacattcaaccaattgtttcaatgcatccttta |
146 |
Q |
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| T |
28603528 |
tctgcattcaactatgtgtttcaatgcatccttta |
28603562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 28602114 - 28602220
Alignment:
| Q |
38 |
tcaaaaaactcaatcttagcattttcattctcaggaagatagtatccatatacataagcccatttgagaactcttctacattcaaccaattgtttcaatg |
137 |
Q |
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| T |
28602114 |
tcaaaaaactcaatcttagcattttcatcctcgggaagatagtattcatatacataactccatctcataactcttcgacattcaattacctgtttccatg |
28602213 |
T |
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| Q |
138 |
catcctt |
144 |
Q |
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||||||| |
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| T |
28602214 |
catcctt |
28602220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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