View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3060-Insertion-27 (Length: 259)

Name: NF3060-Insertion-27
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3060-Insertion-27
NF3060-Insertion-27
[»] chr3 (20 HSPs)
chr3 (7-169)||(23352530-23352692)
chr3 (7-169)||(23454648-23454810)
chr3 (7-167)||(23469116-23469276)
chr3 (23-166)||(23447886-23448029)
chr3 (23-166)||(23499654-23499797)
chr3 (9-166)||(23479175-23479332)
chr3 (18-166)||(23401658-23401806)
chr3 (10-148)||(23473054-23473192)
chr3 (9-149)||(23405259-23405399)
chr3 (9-149)||(23463890-23464030)
chr3 (7-148)||(23440525-23440666)
chr3 (7-149)||(23386885-23387027)
chr3 (39-151)||(35768753-35768865)
chr3 (27-166)||(23398531-23398670)
chr3 (37-149)||(36024243-36024355)
chr3 (104-151)||(36003144-36003191)
chr3 (227-259)||(23352440-23352472)
chr3 (227-259)||(23454558-23454590)
chr3 (231-259)||(23469024-23469052)
chr3 (231-259)||(35768945-35768973)
[»] scaffold0201 (2 HSPs)
scaffold0201 (7-169)||(12034-12196)
scaffold0201 (227-259)||(11944-11976)
[»] chr4 (1 HSPs)
chr4 (12-151)||(12896224-12896363)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 23352692 - 23352530
Alignment:
Q  7 aggaattgaacaaacgtgattctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaat 106  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||    
T  23352692 aggaattgaacaaacgtgattctcttcagctattctgtttgtctgccttcagagaaaagcatcctaatattggatatgaagatctatcagaacgtgtaat 23352593  T
Q  107 tgcctattgcgaaggcaatccgctggctttaaaagttttaggtgctaatctgagttcaagagg 169  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23352592 tgcctattgccaaggcaatccgctggctttaaaagttttaggtgctaatctgagttcaagagg 23352530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 23454810 - 23454648
Alignment:
Q  7 aggaattgaacaaacgtgattctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaat 106  Q
    |||||||||| || | ||||||| |||  |||||| ||||| ||| |||||  || || |||||||||| |||||||||||||||||||||  |||||||    
T  23454810 aggaattgaataatcatgattcttttcagctattcagtttgactgtcttcaaggaaaaacatcctaaaattggatatgaagatctatcagagagtgtaat 23454711  T
Q  107 tgcctattgcgaaggcaatccgctggctttaaaagttttaggtgctaatctgagttcaagagg 169  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23454710 tgcctattgcaaaggcaatcctctggctttaaaagttttaggtgctaatctgagttcaagagg 23454648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 23469276 - 23469116
Alignment:
Q  7 aggaattgaacaaacgtgattctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaat 106  Q
    ||||||||||||||| |||||||||||  |||||  ||||| ||  |||| |||| || |||||||||| |||||||||||||||||||||  |||||||    
T  23469276 aggaattgaacaaacatgattctcttcaactattgagtttgactatcttcggagaaaaacatcctaaaattggatatgaagatctatcagagagtgtaat 23469177  T
Q  107 tgcctattgcgaaggcaatccgctggctttaaaagttttaggtgctaatctgagttcaaga 167  Q
    |||||||||| |||||||||| |||||| |||||||||||||||| |||| ||||||||||    
T  23469176 tgcctattgcaaaggcaatcctctggctataaaagttttaggtgcaaatccgagttcaaga 23469116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 23448029 - 23447886
Alignment:
Q  23 tgattctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaattgcctattgcgaaggc 122  Q
    |||||||||||  |||||| |||||  |||||||| ||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||     
T  23448029 tgattctcttcagctattcagtttgattgccttcaaagaaaaacatcctaaaactggatatgaagatctatcagatagtgtaattgcctattgcaaaggt 23447930  T
Q  123 aatccgctggctttaaaagttttaggtgctaatctgagttcaag 166  Q
    || || ||||||||||||||||||||||| ||||| ||||||||    
T  23447929 aaccctctggctttaaaagttttaggtgcaaatctcagttcaag 23447886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 23499797 - 23499654
Alignment:
Q  23 tgattctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaattgcctattgcgaaggc 122  Q
    |||||||||||  |||||| ||||| ||||||||| ||| || |||||||||||||||||||||||| |||||||  ||||||||||||||||| ||||     
T  23499797 tgattctcttcagctattcagtttgactgccttcaaagaaaaacatcctaaaactggatatgaagatgtatcagatagtgtaattgcctattgcaaaggt 23499698  T
Q  123 aatccgctggctttaaaagttttaggtgctaatctgagttcaag 166  Q
    || || ||||||||||||||||||||||| ||||| ||||||||    
T  23499697 aaccctctggctttaaaagttttaggtgcaaatctcagttcaag 23499654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 23479332 - 23479175
Alignment:
Q  9 gaattgaacaaacgtgattctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaattg 108  Q
    ||||||||||| | ||||||| |||  |||||| ||||| ||||||||| ||| || || ||||||| |||||||||||||||||||||| |||||||||    
T  23479332 gaattgaacaagcatgattcttttcagctattcagtttgactgccttcaaagaaaaacaacctaaaattggatatgaagatctatcagaaagtgtaattg 23479233  T
Q  109 cctattgcgaaggcaatccgctggctttaaaagttttaggtgctaatctgagttcaag 166  Q
    |||||||| |||| || || ||||| ||||||||||||||||| ||||| ||||||||    
T  23479232 cctattgcaaaggtaaccctctggcattaaaagttttaggtgcaaatctcagttcaag 23479175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 23401806 - 23401658
Alignment:
Q  18 aaacgtgattctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaattgcctattgcg 117  Q
    |||| ||||||||||| ||||||  ||||| ||  |||| |||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  23401806 aaacatgattctcttcatctattgagtttgactatcttctgagaaaaacatcctaaaactggatatgaagatctatcagaaagtgtaattgcctattgca 23401707  T
Q  118 aaggcaatccgctggctttaaaagttttaggtgctaatctgagttcaag 166  Q
    |||||||||  |||||| |||||||||||||||  |||| |||||||||    
T  23401706 aaggcaatcatctggctataaaagttttaggtgaaaatccgagttcaag 23401658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 23473192 - 23473054
Alignment:
Q  10 aattgaacaaacgtgattctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaattgc 109  Q
    |||||||||| | |||||||||||  |||||| |||||  ||||||| |||  || || ||||||| |||||||||||||||||||||| ||||||||||    
T  23473192 aattgaacaatcatgattctcttcagctattcagtttgaatgccttcggaggaaaacagcctaaaattggatatgaagatctatcagaaagtgtaattgc 23473093  T
Q  110 ctattgcgaaggcaatccgctggctttaaaagttttagg 148  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  23473092 ctattgcaaaggcaatcctctggctttaaaagttttagg 23473054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 23405399 - 23405259
Alignment:
Q  9 gaattgaacaaacgtgattctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaattg 108  Q
    ||||||||||||| |||||||||||  |||||| |||||| ||||||| |||| || || ||||||| |||||||||||||||||| ||| |||||||||    
T  23405399 gaattgaacaaacatgattctcttcaactattcagtttgtttgccttcggagaaaaacagcctaaaattggatatgaagatctatctgaaagtgtaattg 23405300  T
Q  109 cctattgcgaaggcaatccgctggctttaaaagttttaggt 149  Q
    ||||||||  |||||| ||  ||||||||||||||||||||    
T  23405299 cctattgcagaggcaaccctttggctttaaaagttttaggt 23405259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 23464030 - 23463890
Alignment:
Q  9 gaattgaacaaacgtgattctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaattg 108  Q
    ||||||||||||| |||||||||||  |||||| |||||| ||||||| |||| || || ||||||| |||||||||||||||||| ||| |||||||||    
T  23464030 gaattgaacaaacatgattctcttcaactattcagtttgtttgccttcggagaaaaacagcctaaaattggatatgaagatctatcggaaagtgtaattg 23463931  T
Q  109 cctattgcgaaggcaatccgctggctttaaaagttttaggt 149  Q
    ||||||||  |||||| ||  ||||||||||||||||||||    
T  23463930 cctattgcagaggcaaccctttggctttaaaagttttaggt 23463890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 23440666 - 23440525
Alignment:
Q  7 aggaattgaacaaacgtgattctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaat 106  Q
    ||||||||||||| | |||||||||||  ||| || |||||  ||||||| |||| || ||  |||||| ||||| |||||||||||||||| |||||||    
T  23440666 aggaattgaacaaccatgattctcttcagctactcagtttgaatgccttcggagaaaaacagtctaaaattggatgtgaagatctatcagaaagtgtaat 23440567  T
Q  107 tgcctattgcgaaggcaatccgctggctttaaaagttttagg 148  Q
    |||||||||| |||||||||| ||||||||||||||||||||    
T  23440566 tgcctattgcaaaggcaatcctctggctttaaaagttttagg 23440525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 23387027 - 23386885
Alignment:
Q  7 aggaattgaacaaacgtgattctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaat 106  Q
    ||||||||||||| | |||||||||||   ||||| |||||  ||||||| |||| || || ||||||| ||||||||||||| |||||||| |||||||    
T  23387027 aggaattgaacaaccatgattctcttcagttattcagtttgaatgccttcggagaaaaacagcctaaaattggatatgaagatatatcagaaagtgtaat 23386928  T
Q  107 tgcctattgcgaaggcaatccgctggctttaaaagttttaggt 149  Q
    ||||||||||  |||||| ||  ||||||||||||||||||||    
T  23386927 tgcctattgcagaggcaaccctttggctttaaaagttttaggt 23386885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 35768753 - 35768865
Alignment:
Q  39 ttctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaattgcctattgcgaaggcaatccgctggctttaa 138  Q
    ||||||||| |||  |||| ||| ||||||||||||| |||||||||||| || |||||| |||| |||||||||||| ||||||||||  |||||||||    
T  35768753 ttctgtttgactgtattcaaagaaaagcatcctaaaagtggatatgaagagctctcagaaagtgttattgcctattgcaaaggcaatcctttggctttaa 35768852  T
Q  139 aagttttaggtgc 151  Q
    ||||||| |||||    
T  35768853 aagttttgggtgc 35768865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 23398670 - 23398531
Alignment:
Q  27 tctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaattgcctattgcgaaggcaatc 126  Q
    |||||||  |||||| ||||  || |||||||||| || |||||||||| ||||||| ||||||||||| || || |||||||||||||  || | || |    
T  23398670 tctcttcagctattcagttttccttccttcagagaaaaacatcctaaaattggatataaagatctatcacaaagtctaattgcctattgtaaatgaaacc 23398571  T
Q  127 cgctggctttaaaagttttaggtgctaatctgagttcaag 166  Q
    | ||||||||||||||||||| ||| ||||  ||||||||    
T  23398570 ctctggctttaaaagttttagctgcaaatccaagttcaag 23398531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 36024355 - 36024243
Alignment:
Q  37 tattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaattgcctattgcgaaggcaatccgctggcttt 136  Q
    |||||||||||   || |||||||| ||  ||||||||| ||| |||| |||||||||| || | | ||||| |||||||| ||||||||| || | |||    
T  36024355 tattctgtttggaggctttcagagaaaaatatcctaaaattgggtatggagatctatcaaaaagagcaattggctattgcggaggcaatcccctaggttt 36024256  T
Q  137 aaaagttttaggt 149  Q
    |||||||||||||    
T  36024255 aaaagttttaggt 36024243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 36003191 - 36003144
Alignment:
Q  104 aattgcctattgcgaaggcaatccgctggctttaaaagttttaggtgc 151  Q
    ||||| |||||||| ||||||||| |||||||||||||||||||||||    
T  36003191 aattggctattgcggaggcaatcccctggctttaaaagttttaggtgc 36003144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 23352472 - 23352440
Alignment:
Q  227 ttacaatgtgttaaaattgagttatgatgactt 259  Q
    |||||||||||||||||||||||||||||||||    
T  23352472 ttacaatgtgttaaaattgagttatgatgactt 23352440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 23454590 - 23454558
Alignment:
Q  227 ttacaatgtgttaaaattgagttatgatgactt 259  Q
    ||||||||| |||||||||||||||||||||||    
T  23454590 ttacaatgtattaaaattgagttatgatgactt 23454558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 259
Target Start/End: Complemental strand, 23469052 - 23469024
Alignment:
Q  231 aatgtgttaaaattgagttatgatgactt 259  Q
    |||||||||||||||||||||||||||||    
T  23469052 aatgtgttaaaattgagttatgatgactt 23469024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 259
Target Start/End: Original strand, 35768945 - 35768973
Alignment:
Q  231 aatgtgttaaaattgagttatgatgactt 259  Q
    |||||||||||||||||||||||||||||    
T  35768945 aatgtgttaaaattgagttatgatgactt 35768973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 12196 - 12034
Alignment:
Q  7 aggaattgaacaaacgtgattctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaat 106  Q
    ||||||||||||| | |||||||||||   ||||| |||||  ||||||| |||| || || ||||||| |||||||||||||||||||||| |||||||    
T  12196 aggaattgaacaaccatgattctcttcagttattcagtttgaatgccttcggagaaaaacagcctaaaattggatatgaagatctatcagaaagtgtaat 12097  T
Q  107 tgcctattgcgaaggcaatccgctggctttaaaagttttaggtgctaatctgagttcaagagg 169  Q
    | |||||||| |||||||||| || |||||||||||| |||| || |||||  ||||||||||    
T  12096 ttcctattgcaaaggcaatcctctagctttaaaagttataggggcaaatctccgttcaagagg 12034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 11976 - 11944
Alignment:
Q  227 ttacaatgtgttaaaattgagttatgatgactt 259  Q
    |||||||||||||||||||||||||||||||||    
T  11976 ttacaatgtgttaaaattgagttatgatgactt 11944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 12896224 - 12896363
Alignment:
Q  12 ttgaacaaacgtgattctcttcgtctattctgtttgtctgccttcagagataagcatcctaaaactggatatgaagatctatcagaacgtgtaattgcct 111  Q
    ||||||| | |||| |||||||  |||||||||  |  ||||||  |||| || |||||||||  ||||||||| ||||||||| |  ||| ||||| ||    
T  12896224 ttgaacataggtgactctcttcagctattctgtaggaatgcctttggagaaaaacatcctaaagatggatatgaggatctatcaaagagtgcaattggct 12896323  T
Q  112 attgcgaaggcaatccgctggctttaaaagttttaggtgc 151  Q
    ||||   ||||||||| |||||||| ||||||||||||||    
T  12896324 attgtagaggcaatcccctggctttgaaagttttaggtgc 12896363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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