View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-29 (Length: 293)
Name: NF3060-Insertion-29
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-29 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 38973183 - 38972895
Alignment:
| Q |
7 |
aaataccttagttaattgtagagaattaaaaatcaactatttatctctaattctctattgataattgaaggataatcttgaaaagagaatgcatattgtt |
106 |
Q |
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| T |
38973183 |
aaataccttagttaattgtagagaattaaaaatcaactatttatctctaattctctattgataattgatggataatcttgaaaagagaatgcatattgtt |
38973084 |
T |
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| Q |
107 |
gactaatttagagtaaaaacaagatttcttaattcgtgtgcttttatcaaaagagttttata--tataggaaagcatgtaatacctatatttccttcata |
204 |
Q |
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| T |
38973083 |
gactaatttagagtaaaaataaaatttcttaattcgtgtgcttttatcaaaagagttttatatatataggaaagcatgtaatacctatatttccttcata |
38972984 |
T |
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| Q |
205 |
tgcaaaacattatatagatttggactgcatgcaccaactcgtcttagccgttcgattttgaatcgacggacaaggtcatttacggttga |
293 |
Q |
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| T |
38972983 |
tgcaaaacattgtatagatttggactgcatgcaccaactcgtcttagccgttcgattttgaatcgacagacaaggtcatttacggttga |
38972895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 41821415 - 41821455
Alignment:
| Q |
14 |
ttagttaattgtagagaattaaaaatcaactatttatctct |
54 |
Q |
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| T |
41821415 |
ttagttaattgtggagagttaaaaatcaattatttatctct |
41821455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 47500796 - 47500910
Alignment:
| Q |
58 |
tctctattgataattgaaggataatcttgaaaagagaatgcatattgttgactaatttagagtaaaaacaagatttcttaattcgtgtgcttttatcaaa |
157 |
Q |
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| T |
47500796 |
tctctcttaataattgaaggataattttgagaagagaatttacattgttgacaaatttaatgcaaaaacaa-ttttcttaattcttgtgcttttatcaaa |
47500894 |
T |
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| Q |
158 |
agagttttatatatag |
173 |
Q |
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| T |
47500895 |
agggtcttgtatatag |
47500910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 30074025 - 30073982
Alignment:
| Q |
131 |
tttcttaattcgtgtgcttttatcaaaagagttttatatatagg |
174 |
Q |
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| T |
30074025 |
tttcttaattcttgtgcttttatcaaaagggtcttatatatagg |
30073982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 25095275 - 25095333
Alignment:
| Q |
58 |
tctctattgataattgaaggataatcttgaaaagagaatgcatattgttgactaattta |
116 |
Q |
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| T |
25095275 |
tctctcttaataattgaaggataatcttgaaaagagaatgtatattgttgacaaattta |
25095333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 13023208 - 13023244
Alignment:
| Q |
18 |
ttaattgtagagaattaaaaatcaactatttatctct |
54 |
Q |
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| T |
13023208 |
ttaattgtagagaattaaaaaccaactatttatctct |
13023244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 12994084 - 12994120
Alignment:
| Q |
18 |
ttaattgtagagaattaaaaatcaactatttatctct |
54 |
Q |
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| T |
12994084 |
ttaattgtagagaattaaagaccaactatttatctct |
12994120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 39885200 - 39885152
Alignment:
| Q |
57 |
ttctctattgataattgaaggataatcttgaaaagagaatgcatattgt |
105 |
Q |
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|||||| || |||||||||||||||| ||| |||||||||| ||||||| |
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| T |
39885200 |
ttctctcttaataattgaaggataattttggaaagagaatgtatattgt |
39885152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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