View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3060-Insertion-3 (Length: 538)

Name: NF3060-Insertion-3
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3060-Insertion-3
NF3060-Insertion-3
[»] chr1 (1 HSPs)
chr1 (12-538)||(15603612-15604164)


Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 12 - 538
Target Start/End: Original strand, 15603612 - 15604164
Alignment:
Q  12 ttgtgctaatgtgaaaagacttacgacttaaggatgctgagcaagtttctggtgaaggattcaataatgttgcagcttatgttatgatcaatgtgctttg 111  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  15603612 ttgtgctaatgtgaaaagacttacgacttaaggatgcagagcaagtttttggtgaaggattcaataatgtcgcaacttatgttatgatcaatgtgctttg 15603711  T
Q  112 ttaagagggttagtttgaagaatcacctgtcttgcaggtgcagtnnnnnnntggaagatacttgcttaagttgtaactgatgaaataattctacgcactc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603712 ttaagagggttagtttgaagaatcacctgtcttgcaggtgcagtaaaaaa-tggaagatacttgcttaagttgtaactgatgaaataattctacgcactc 15603810  T
Q  212 tcactatagatctcttttaagactaaaagtaggtaaggttaaagtgatgtactatgtattggggtcactacgacttttgttttgattaaatat------- 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||           
T  15603811 tcactatagatctcttttaagactaaaagtaggtaaggttaaagtgatgtactatgtattggggtcactatgactttagttttgattaaatatatttact 15603910  T
Q  305 ---------aatttgatagtgtagttattgtaactttcaatttgatattgtagttac------------tgtaaggttcaatttgatattgtatttggaa 383  Q
             ||||||||| ||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||| |||| ||||||    
T  15603911 gtaagtttcaatttgatattgtagttattgtaactttcaatttgatattgtagttactattgtagtgagtgtaaggttcaatttgataatgtagttggaa 15604010  T
Q  384 agtgttggttttttaagccttgaaaataaaatccctatttcttccctattgttgatttctgtgtaatttttcattttatagctactagannnnnnnncct 483  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||| | ||||||||||||||||        |||    
T  15604011 agtgttggttttttaagccttgaaaat-aaatccctctttcttccctattgttgatttctgtatgattttaccttttatagctactagattttttttcct 15604109  T
Q  484 tttcagtttgttgtagttttcttgcagacctggtagaattcaaatcatatacgta 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15604110 tttcagtttgttgtagttttcttgcagacctggtagaattcaaatcatatacgta 15604164  T

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