View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3060-Insertion-36 (Length: 61)

Name: NF3060-Insertion-36
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3060-Insertion-36
NF3060-Insertion-36
[»] chr6 (1 HSPs)
chr6 (8-61)||(34084068-34084121)
[»] chr2 (8 HSPs)
chr2 (8-61)||(23177903-23177956)
chr2 (8-61)||(23589160-23589213)
chr2 (8-61)||(6708813-6708866)
chr2 (8-61)||(12853115-12853168)
chr2 (20-57)||(14714733-14714770)
chr2 (20-57)||(14714901-14714938)
chr2 (8-57)||(4512335-4512384)
chr2 (18-57)||(21010336-21010375)
[»] scaffold1974 (1 HSPs)
scaffold1974 (8-61)||(462-515)
[»] scaffold1878 (1 HSPs)
scaffold1878 (8-61)||(759-812)
[»] scaffold0051 (1 HSPs)
scaffold0051 (8-57)||(39739-39788)
[»] chr3 (5 HSPs)
chr3 (8-61)||(11219659-11219712)
chr3 (19-57)||(39133257-39133295)
chr3 (8-57)||(17349940-17349989)
chr3 (8-61)||(32979317-32979370)
chr3 (21-57)||(53808560-53808596)
[»] chr1 (8 HSPs)
chr1 (8-61)||(26055981-26056034)
chr1 (18-57)||(50678601-50678640)
chr1 (13-55)||(14764463-14764505)
chr1 (8-57)||(37624408-37624457)
chr1 (8-57)||(51218803-51218852)
chr1 (13-57)||(27689521-27689565)
chr1 (13-57)||(30551427-30551471)
chr1 (19-61)||(23081960-23082002)
[»] chr8 (10 HSPs)
chr8 (20-57)||(37276064-37276101)
chr8 (8-57)||(44103132-44103181)
chr8 (8-57)||(45541708-45541757)
chr8 (13-56)||(10052338-10052381)
chr8 (22-57)||(39325671-39325706)
chr8 (19-57)||(13513660-13513698)
chr8 (19-57)||(13603193-13603231)
chr8 (20-50)||(21962064-21962094)
chr8 (24-57)||(36756310-36756343)
chr8 (13-57)||(13363416-13363460)
[»] chr5 (1 HSPs)
chr5 (8-57)||(21387866-21387915)
[»] chr4 (3 HSPs)
chr4 (8-57)||(2293362-2293411)
chr4 (13-55)||(38418857-38418899)
chr4 (8-57)||(43894334-43894383)
[»] chr7 (2 HSPs)
chr7 (20-57)||(24494887-24494924)
chr7 (8-55)||(35315077-35315124)
[»] scaffold0098 (1 HSPs)
scaffold0098 (23-55)||(41152-41184)
[»] scaffold0015 (1 HSPs)
scaffold0015 (20-50)||(207643-207673)
[»] scaffold0084 (1 HSPs)
scaffold0084 (8-57)||(13042-13091)
[»] scaffold0046 (1 HSPs)
scaffold0046 (23-57)||(23674-23708)


Alignment Details
Target: chr6 (Bit Score: 50; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 34084121 - 34084068
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaatacttt 61  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34084121 gaattatgtagggtctattgtactttactgtgaaccactaacacctaatacttt 34084068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 23177903 - 23177956
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaatacttt 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23177903 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaattcttt 23177956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 23589160 - 23589213
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaatacttt 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23589160 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaattcttt 23589213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 6708866 - 6708813
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaatacttt 61  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||||| |||||    
T  6708866 gaattatgtagggtctattgcactttcctgtgaaccactaacacctaacacttt 6708813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 12853115 - 12853168
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaatacttt 61  Q
    ||||||||| | |||||||||||||| |||| |||||||||||||||| |||||    
T  12853115 gaattatgtagagtctattgtactttcctgtcaaccactaacacctaacacttt 12853168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 14714733 - 14714770
Alignment:
Q  20 gtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||||||||| |||||||||||||||||||||||||||    
T  14714733 gtctattgtattttactgtgaaccactaacacctaata 14714770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 14714901 - 14714938
Alignment:
Q  20 gtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||||||||| |||||||||||||||||||||||||||    
T  14714901 gtctattgtattttactgtgaaccactaacacctaata 14714938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 4512335 - 4512384
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||| |||| ||||||||| ||||||||||||||||| | ||||||||||    
T  4512335 gaatcatgtggggtctattatactttactgtgaaccattcacacctaata 4512384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 21010375 - 21010336
Alignment:
Q  18 gggtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||||||||||| |||| | ||||||||||||||||||||    
T  21010375 gggtctattgtattttattatgaaccactaacacctaata 21010336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 515 - 462
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaatacttt 61  Q
    ||||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  515 gaattatgtcgggtctattatactttactgtgaatcattaacacctaatacttt 462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 759 - 812
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaatacttt 61  Q
    ||||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  759 gaattatgtcgggtctattatactttactgtgaatcattaacacctaatacttt 812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 39788 - 39739
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaata 57  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  39788 gaattatgtagggtctattgtactttactgtgaaccactaacatctaata 39739  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 11219659 - 11219712
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaatacttt 61  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||    
T  11219659 gaattatgtagggtctattgtactttcctgtgaaccactaacacctaacacttt 11219712  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 39133257 - 39133295
Alignment:
Q  19 ggtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  39133257 ggtctattgtactttattgtgaaccactaacacctaata 39133295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 17349989 - 17349940
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||| |||| |||||||||| |||||| ||||||||||||||||||||||    
T  17349989 gaatcatgtagggtctattgaactttattgtgaaccactaacacctaata 17349940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 32979317 - 32979370
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaatacttt 61  Q
    ||||||||| |||| |||||||||||| ||| || |||||||||||||||||||    
T  32979317 gaattatgtagggtatattgtactttattgtaaatcactaacacctaatacttt 32979370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 53808560 - 53808596
Alignment:
Q  21 tctattgtactttactgtgaaccactaacacctaata 57  Q
    ||||||||| |||||||||||||||||||||||||||    
T  53808560 tctattgtattttactgtgaaccactaacacctaata 53808596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 26056034 - 26055981
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaatacttt 61  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||    
T  26056034 gaattatgtagggtctattgtactttcctgtgaaccactaacacctaaaacttt 26055981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 50678601 - 50678640
Alignment:
Q  18 gggtctattgtactttactgtgaaccactaacacctaata 57  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  50678601 gggtctattgtactttactgtgaacgactaacacctaata 50678640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 14764463 - 14764505
Alignment:
Q  13 atgtcgggtctattgtactttactgtgaaccactaacacctaa 55  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  14764463 atgtagggtctattgcactttactgtgaaccactaacacctaa 14764505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 37624457 - 37624408
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||| |||| |||||||||||| |||| ||||||||||||||||||||||    
T  37624457 gaatcatgtagggtctattgtattttagtgtgaaccactaacacctaata 37624408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 51218852 - 51218803
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||| |||| |||||||||||||||| |||||||||||| ||||||||||    
T  51218852 gaatcatgtggggtctattgtactttcctgtgaaccactcacacctaata 51218803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 27689521 - 27689565
Alignment:
Q  13 atgtcgggtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||| |||||||||||| |||| ||||||||||||||||||||||    
T  27689521 atgtagggtctattgtattttagtgtgaaccactaacacctaata 27689565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 30551471 - 30551427
Alignment:
Q  13 atgtcgggtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||| |||||||||||| |||| ||||||||||||||||||||||    
T  30551471 atgtagggtctattgtattttagtgtgaaccactaacacctaata 30551427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 23082002 - 23081960
Alignment:
Q  19 ggtctattgtactttactgtgaaccactaacacctaatacttt 61  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||    
T  23082002 ggtctattgtattttagtgtaaaccactaacacctaatacttt 23081960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 37276101 - 37276064
Alignment:
Q  20 gtctattgtactttactgtgaaccactaacacctaata 57  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37276101 gtctattgtactttactgtgaaccactaacacctaata 37276064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 44103181 - 44103132
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||| |||| ||||||||||||||||| ||||||||||| ||||||||||    
T  44103181 gaatcatgtggggtctattgtactttattgtgaaccactcacacctaata 44103132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 45541708 - 45541757
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaata 57  Q
    ||||||||| ||||||||||||||||||||| ||||||||| | ||||||    
T  45541708 gaattatgtagggtctattgtactttactgtaaaccactaatatctaata 45541757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 10052338 - 10052381
Alignment:
Q  13 atgtcgggtctattgtactttactgtgaaccactaacacctaat 56  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||    
T  10052338 atgtagggtctattgtattttactgtgaaccactaccacctaat 10052381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 39325706 - 39325671
Alignment:
Q  22 ctattgtactttactgtgaaccactaacacctaata 57  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39325706 ctattgtactttactgtgaaccattaacacctaata 39325671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 13513660 - 13513698
Alignment:
Q  19 ggtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  13513660 ggtctattgtactttactgtgaaccactcacaccaaata 13513698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 13603193 - 13603231
Alignment:
Q  19 ggtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  13603193 ggtctattgtactttactgtgaaccactcacaccaaata 13603231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 21962064 - 21962094
Alignment:
Q  20 gtctattgtactttactgtgaaccactaaca 50  Q
    |||||||||||||||||||||||||||||||    
T  21962064 gtctattgtactttactgtgaaccactaaca 21962094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 36756310 - 36756343
Alignment:
Q  24 attgtactttactgtgaaccactaacacctaata 57  Q
    |||||| |||||||||||||||||||||||||||    
T  36756310 attgtattttactgtgaaccactaacacctaata 36756343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 13363460 - 13363416
Alignment:
Q  13 atgtcgggtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||| |||||||||||| |||  ||||||||||||||||||||||    
T  13363460 atgtagggtctattgtatttttgtgtgaaccactaacacctaata 13363416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 21387866 - 21387915
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaata 57  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  21387866 gaattatgtagggtctattgtactttactgtaaacgactaacacctaata 21387915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 2293411 - 2293362
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaata 57  Q
    |||| |||| ||||||||||||||||||||||||||||| ||||||||||    
T  2293411 gaatcatgtggggtctattgtactttactgtgaaccactcacacctaata 2293362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 38418899 - 38418857
Alignment:
Q  13 atgtcgggtctattgtactttactgtgaaccactaacacctaa 55  Q
    |||| ||||||||||||||||||| ||||||||||||||||||    
T  38418899 atgtagggtctattgtactttactatgaaccactaacacctaa 38418857  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 43894334 - 43894383
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaata 57  Q
    ||||| ||| ||||||||||||||||| ||| ||||||||||| ||||||    
T  43894334 gaattttgtagggtctattgtactttagtgtcaaccactaacatctaata 43894383  T

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Target: chr7 (Bit Score: 34; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 24494924 - 24494887
Alignment:
Q  20 gtctattgtactttactgtgaaccactaacacctaata 57  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  24494924 gtctattgtactttactgtgaaccactcacacctaata 24494887  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 35315124 - 35315077
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaa 55  Q
    |||| |||| |||||| |||||||||||||||||| ||||||||||||    
T  35315124 gaatcatgtagggtcttttgtactttactgtgaactactaacacctaa 35315077  T

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Target: scaffold0098 (Bit Score: 33; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 41152 - 41184
Alignment:
Q  23 tattgtactttactgtgaaccactaacacctaa 55  Q
    |||||||||||||||||||||||||||||||||    
T  41152 tattgtactttactgtgaaccactaacacctaa 41184  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 207673 - 207643
Alignment:
Q  20 gtctattgtactttactgtgaaccactaaca 50  Q
    |||||||||||||||||||||||||||||||    
T  207673 gtctattgtactttactgtgaaccactaaca 207643  T

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Target: scaffold0084 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 13091 - 13042
Alignment:
Q  8 gaattatgtcgggtctattgtactttactgtgaaccactaacacctaata 57  Q
    ||||| ||| ||||||||||||||||| ||| ||||||||||| ||||||    
T  13091 gaattttgtagggtctattgtactttattgtcaaccactaacatctaata 13042  T

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Target: scaffold0046 (Bit Score: 27; Significance: 0.000001; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 23674 - 23708
Alignment:
Q  23 tattgtactttactgtgaaccactaacacctaata 57  Q
    |||||||||||||||| ||||||||||| ||||||    
T  23674 tattgtactttactgtcaaccactaacatctaata 23708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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