View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-7 (Length: 223)
Name: NF3060-Insertion-7
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 12610552 - 12610769
Alignment:
| Q |
6 |
cattatcaagttgagtgatgaatgtgctgaaaatggatgtatcagggacccccaaaccttctgccattagctccaatatctcacatgccagctccttcac |
105 |
Q |
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| T |
12610552 |
cattatcaagttgagtgatgaatgtgctgaaaatggatgtatcagggacccccaaaccttctgccattagctccaatatctcacatgccagctccttcac |
12610651 |
T |
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| Q |
106 |
agcttctgtatatgcacttacactagagctgtcatgtacaatcatcatacagtagcataatcagaacctataaaatacatgtatgtgttggacctaatgg |
205 |
Q |
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| T |
12610652 |
agcttctgtatatgcacttacactagagctgtcatgtacaatcatcatacagtagcataatcagaacctataaaatacatgtatgtgttggacctaatgg |
12610751 |
T |
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| Q |
206 |
ttacttgcttgcttcttg |
223 |
Q |
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|||||||||||||||||| |
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| T |
12610752 |
ttacttgcttgcttcttg |
12610769 |
T |
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Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 50756321 - 50756224
Alignment:
| Q |
43 |
tgtatcagggacccccaaaccttctgccattagctccaatatctcacatgccagctccttcacagcttctgtatatgcacttacactagagctgtcat |
140 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| ||||| |||||||||||| |||| || ||| | ||||||| |
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| T |
50756321 |
tgtatcagggacccccaaaccctctgccattagctctaatatctcacatgccacctctttcactgcttctgtatattcactcaccctacacctgtcat |
50756224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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