View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060-Insertion-8 (Length: 96)
Name: NF3060-Insertion-8
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060-Insertion-8 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 2e-43; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 21097320 - 21097408
Alignment:
| Q |
8 |
atactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggcttctatatg |
96 |
Q |
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| T |
21097320 |
atactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggcttctatatg |
21097408 |
T |
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Target: chr7; HSP #2
Raw Score: 73; E-Value: 6e-34
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 21106939 - 21107023
Alignment:
| Q |
8 |
atactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggcttcta |
92 |
Q |
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| T |
21106939 |
atactctccttccaggtcaacctcttacaagatatacaaagcttgtagcttcaagaagtgagagtaatcattctactggcttcta |
21107023 |
T |
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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 21131894 - 21131806
Alignment:
| Q |
6 |
caatactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggcttctata |
94 |
Q |
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| T |
21131894 |
caatactctccttcctaatcaaccactcactagatacacaaaacttgtttcttcaagaagccagagtaatcattcttctggcttctata |
21131806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 21112933 - 21112846
Alignment:
| Q |
7 |
aatactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggcttctata |
94 |
Q |
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| T |
21112933 |
aatactctccttcctaatcaacctctcactagatatacaaaccttgtttcttcaagaagccatagtaatcattcttctggcttttata |
21112846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 18660055 - 18659968
Alignment:
| Q |
7 |
aatactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggcttctata |
94 |
Q |
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| T |
18660055 |
aatactctccttcctaatcaacctctcactagatacataaaacttgtttcttcaaaaagccaaagtaatcattcttctggcttctata |
18659968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 21124279 - 21124240
Alignment:
| Q |
55 |
tcttcaataagtgagagtaatcattcttctggcttctata |
94 |
Q |
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| T |
21124279 |
tcttcaagaagccagagtaatcattcttctggcttctata |
21124240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 39130843 - 39130930
Alignment:
| Q |
7 |
aatactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggcttctata |
94 |
Q |
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| T |
39130843 |
aatactctccttcctaatcaacctctcactagatacacaaaacttggttcctcaagaagtcagagtaatcattcttctggcttctata |
39130930 |
T |
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